Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq261 217 2e-54 seq130 179 6e-43 seq104 167 4e-39 seq137 134 2e-29 seq29 134 2e-29 seq553 129 9e-28 seq96 127 3e-27 seq116 125 1e-26 seq189 91.5 2e-16 seq182 75.2 2e-11 seq151 75.2 2e-11 >seq261 Length=5070672 Score = 217 bits (240), Expect = 2e-54 Identities = 202/251 (80%), Gaps = 9/251 (4%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||||||| || | ||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 2381566 GTCAGTGTAGTGCACATGCAGCCCTGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 2381508 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130 ||| || | |||||| | |||| | |||||||||||||| | | || ||| | Sbjct 2381507 CAATCT-CGGGTGGCTGAATGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCT 2381449 Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | | | | ||| |||||| | | |||||||| |||||||||||| ||||||| Sbjct 2381448 CGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTAGTTATCGGAATTGACCAGAC 2381389 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||| Sbjct 2381388 AAATCACTCCACCAACTAAAAACGGCCATGCACCACCACCCACGGAATGGAGAAAGAGCT 2381329 Query 248 ATCAATCTGTC 258 ||||||||||| Sbjct 2381328 ATCAATCTGTC 2381318 >seq130 Length=8672310 Score = 179 bits (198), Expect = 6e-43 Identities = 193/251 (77%), Gaps = 11/251 (4%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||| ||| | | ||| |||| ||||| |||||||||||| |||||| ||||| | Sbjct 3195883 GTCAGTATAGTGAG--TGCAGCCCCAGACATCGAAGGGCATCACACACCTGTAATTGC-T 3195939 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAAC---- 127 ||| || | |||||| | |||| | ||||||||||||||| | ||||||| Sbjct 3195940 CAATCT-CAGGTGGCTGAATGCCACTTGTCCCTCTAAGAAGCTGGGGGACACCAACTGCT 3195998 Query 128 CATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 || | | | | ||| |||||| | | ||||| |||||||| ||||||||||||| Sbjct 3195999 CAGGGGTCACGTGACTAATTAGCATGCCAGAGTCTCATTCGTTATTAGAATTAACCAGAC 3196058 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||||| ||||||||||||||||| ||||||||||| ||| |||||||| ||||| || Sbjct 3196059 AAATCGCTCCACCAACTAAGAACAGCCATGCACCATCACACATAGAATTGCAAAAGAACT 3196118 Query 248 ATCAATCTGTC 258 ||||||||||| Sbjct 3196119 ATCAATCTGTC 3196129 >seq104 Length=10215233 Score = 167 bits (184), Expect = 4e-39 Identities = 107/117 (91%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | |||||||||||||||||||||||||||||||||| |||||||| Sbjct 8249068 CTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 8249127 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 8249128 ACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCTATCAATCTGTC 8249184 >seq137 Length=8630700 Score = 134 bits (148), Expect = 2e-29 Identities = 83/89 (93%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 169 TTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCC 228 ||||||||||||||||| ||||| |||||||||||||||| ||||||| |||||||||| Sbjct 7884829 TTATCGGAATTAACCAGTCAAATTGCTCCACCAACTAAGAATGGCCATGTACCACCACCC 7884770 Query 229 ATAGAATCAAGAAAGAGCTATCAATCTGT 257 | ||||||||||||||||||||||||||| Sbjct 7884769 ACAGAATCAAGAAAGAGCTATCAATCTGT 7884741 >seq29 Length=19260028 Score = 134 bits (148), Expect = 2e-29 Identities = 100/117 (85%), Gaps = 4/117 (3%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | | ||||||||||||||||||||||||||||||| |||||||| Sbjct 6166687 CTAGTTAGCATGCCAGAGCCTCGTTCGTTATCGGAATTAACCAGACAAATTGCTCCACCA 6166746 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 | ||| |||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 6166747 A----GAATGGCCATGCACCACCACTCACGGAATCAAGAAAGAGCTATCAATCTGTC 6166799 >seq553 Length=1729820 Score = 129 bits (142), Expect = 9e-28 Identities = 76/79 (96%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| || Sbjct 399652 AACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAG 399593 Query 240 AAAGAGCTATCAATCTGTC 258 ||||||||||||||||||| Sbjct 399592 AAAGAGCTATCAATCTGTC 399574 >seq96 Length=10532381 Score = 127 bits (140), Expect = 3e-27 Identities = 87/98 (89%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 161 CTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCAC 220 ||| ||| |||| ||||||||||||||||||| ||| || |||||||||| ||||||||| Sbjct 9927704 CTCATTCATTATTGGAATTAACCAGACAAATCGCTCTACTAACTAAGAACAGCCATGCAC 9927645 Query 221 CACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||| |||||| ||||||||||| ||||||||| Sbjct 9927644 TACCACCCACAGAATCGAGAAAGAGCTAGCAATCTGTC 9927607 >seq116 Length=9636352 Score = 125 bits (138), Expect = 1e-26 Identities = 133/170 (78%), Gaps = 9/170 (5%) Strand=Plus/Plus Query 47 TAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCC 106 |||||||||||||||||||||||||| |||| ||| | ||||| | |||| | ||||| Sbjct 5016766 TAAGGGCATCACAGACCTGTTATTGC-TCAATCTTGGGT-GGCTGAACGCCACTTGTCCC 5016823 Query 107 TCTAAGAAGCCAGC---CACCAACCA-TAGTCGATGGGG---CTATTTAGCAGGTTAAGG 159 ||||||||| | | || ||| | | | | | | ||| |||||| | | | Sbjct 5016824 TCTAAGAAGTTGGGGGACGCCGACCGCTCGGGGGTCGTGTAACTAGTTAGCATGCCAGAG 5016883 Query 160 TCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAA 209 ||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 5016884 TCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAA 5016933 >seq189 Length=6724843 Score = 91.5 bits (100), Expect = 2e-16 Identities = 86/107 (80%), Gaps = 2/107 (2%) Strand=Plus/Plus Query 9 GGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTA 68 ||||| ||||||||| | ||| |||| | |||||||||| |||||||||||||||| Sbjct 6179050 GGCTCGCACAGTGTAGCTTGTTTGCAGCCCCGGACATCTAAGGACATCACAGACCTGTTA 6179109 Query 69 TTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 ||| ||||| | || |||||| | |||| | |||||||||||||| Sbjct 6179110 TTG-CTCAATC-TCGGGTGGCTGAATGCCACTTGTCCCTCTAAGAAG 6179154 >seq182 Length=6978847 Score = 75.2 bits (82), Expect = 2e-11 Identities = 57/66 (86%), Gaps = 1/66 (2%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||| | ||| |||| ||||||||||||||||||||||||||| || || Sbjct 5935400 GTCAGTGTAGCGCTCATGCAGCCCCAGACATCTAAGGGCATCACAGACCTGTTACTG-CT 5935342 Query 75 CAAACT 80 ||| || Sbjct 5935341 CAATCT 5935336 >seq151 Length=8490631 Score = 75.2 bits (82), Expect = 2e-11 Identities = 78/100 (78%), Gaps = 2/100 (2%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||| ||||| | || ||| |||| |||||||||||||||| ||||||||||||| || Sbjct 8357863 GTCACTGTAGTGAGCATGCAGCCCCAGACATCTAAGGGCATCATAGACCTGTTATTG-CT 8357921 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAA 114 ||| | || |||||| | ||| | ||||| |||||| Sbjct 8357922 CAATC-TCGGGTGGCTGAACACCACTTATCCCTGTAAGAA 8357960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796626253029