Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09-
20] 22,509 sequences; 4,444,080,527 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq261 217 2e-54
seq130 179 6e-43
seq104 167 4e-39
seq137 134 2e-29
seq29 134 2e-29
seq553 129 9e-28
seq96 127 3e-27
seq116 125 1e-26
seq189 91.5 2e-16
seq182 75.2 2e-11
seq151 75.2 2e-11
>seq261
Length=5070672
Score = 217 bits (240), Expect = 2e-54
Identities = 202/251 (80%), Gaps = 9/251 (4%)
Strand=Plus/Minus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
|||||||||| || | ||| |||| | ||||||||||||||||||||||||||||||| |
Sbjct 2381566 GTCAGTGTAGTGCACATGCAGCCCTGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 2381508
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130
||| || | |||||| | |||| | |||||||||||||| | | || ||| |
Sbjct 2381507 CAATCT-CGGGTGGCTGAATGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCT 2381449
Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187
| | | | | ||| |||||| | | |||||||| |||||||||||| |||||||
Sbjct 2381448 CGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTAGTTATCGGAATTGACCAGAC 2381389
Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247
||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||
Sbjct 2381388 AAATCACTCCACCAACTAAAAACGGCCATGCACCACCACCCACGGAATGGAGAAAGAGCT 2381329
Query 248 ATCAATCTGTC 258
|||||||||||
Sbjct 2381328 ATCAATCTGTC 2381318
>seq130
Length=8672310
Score = 179 bits (198), Expect = 6e-43
Identities = 193/251 (77%), Gaps = 11/251 (4%)
Strand=Plus/Plus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
|||||| ||| | | ||| |||| ||||| |||||||||||| |||||| ||||| |
Sbjct 3195883 GTCAGTATAGTGAG--TGCAGCCCCAGACATCGAAGGGCATCACACACCTGTAATTGC-T 3195939
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAAC---- 127
||| || | |||||| | |||| | ||||||||||||||| | |||||||
Sbjct 3195940 CAATCT-CAGGTGGCTGAATGCCACTTGTCCCTCTAAGAAGCTGGGGGACACCAACTGCT 3195998
Query 128 CATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187
|| | | | | ||| |||||| | | ||||| |||||||| |||||||||||||
Sbjct 3195999 CAGGGGTCACGTGACTAATTAGCATGCCAGAGTCTCATTCGTTATTAGAATTAACCAGAC 3196058
Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247
||||| ||||||||||||||||| ||||||||||| ||| |||||||| ||||| ||
Sbjct 3196059 AAATCGCTCCACCAACTAAGAACAGCCATGCACCATCACACATAGAATTGCAAAAGAACT 3196118
Query 248 ATCAATCTGTC 258
|||||||||||
Sbjct 3196119 ATCAATCTGTC 3196129
>seq104
Length=10215233
Score = 167 bits (184), Expect = 4e-39
Identities = 107/117 (91%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||| |||||| | | |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 8249068 CTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 8249127
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 8249128 ACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCTATCAATCTGTC 8249184
>seq137
Length=8630700
Score = 134 bits (148), Expect = 2e-29
Identities = 83/89 (93%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 169 TTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCC 228
||||||||||||||||| ||||| |||||||||||||||| ||||||| ||||||||||
Sbjct 7884829 TTATCGGAATTAACCAGTCAAATTGCTCCACCAACTAAGAATGGCCATGTACCACCACCC 7884770
Query 229 ATAGAATCAAGAAAGAGCTATCAATCTGT 257
| |||||||||||||||||||||||||||
Sbjct 7884769 ACAGAATCAAGAAAGAGCTATCAATCTGT 7884741
>seq29
Length=19260028
Score = 134 bits (148), Expect = 2e-29
Identities = 100/117 (85%), Gaps = 4/117 (3%)
Strand=Plus/Plus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||| |||||| | | | ||||||||||||||||||||||||||||||| ||||||||
Sbjct 6166687 CTAGTTAGCATGCCAGAGCCTCGTTCGTTATCGGAATTAACCAGACAAATTGCTCCACCA 6166746
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
| ||| |||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 6166747 A----GAATGGCCATGCACCACCACTCACGGAATCAAGAAAGAGCTATCAATCTGTC 6166799
>seq553
Length=1729820
Score = 129 bits (142), Expect = 9e-28
Identities = 76/79 (96%), Gaps = 0/79 (0%)
Strand=Plus/Minus
Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 399652 AACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAG 399593
Query 240 AAAGAGCTATCAATCTGTC 258
|||||||||||||||||||
Sbjct 399592 AAAGAGCTATCAATCTGTC 399574
>seq96
Length=10532381
Score = 127 bits (140), Expect = 3e-27
Identities = 87/98 (89%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 161 CTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCAC 220
||| ||| |||| ||||||||||||||||||| ||| || |||||||||| |||||||||
Sbjct 9927704 CTCATTCATTATTGGAATTAACCAGACAAATCGCTCTACTAACTAAGAACAGCCATGCAC 9927645
Query 221 CACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|||||||| |||||| ||||||||||| |||||||||
Sbjct 9927644 TACCACCCACAGAATCGAGAAAGAGCTAGCAATCTGTC 9927607
>seq116
Length=9636352
Score = 125 bits (138), Expect = 1e-26
Identities = 133/170 (78%), Gaps = 9/170 (5%)
Strand=Plus/Plus
Query 47 TAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCC 106
|||||||||||||||||||||||||| |||| ||| | ||||| | |||| | |||||
Sbjct 5016766 TAAGGGCATCACAGACCTGTTATTGC-TCAATCTTGGGT-GGCTGAACGCCACTTGTCCC 5016823
Query 107 TCTAAGAAGCCAGC---CACCAACCA-TAGTCGATGGGG---CTATTTAGCAGGTTAAGG 159
||||||||| | | || ||| | | | | | | ||| |||||| | | |
Sbjct 5016824 TCTAAGAAGTTGGGGGACGCCGACCGCTCGGGGGTCGTGTAACTAGTTAGCATGCCAGAG 5016883
Query 160 TCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAA 209
||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 5016884 TCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAA 5016933
>seq189
Length=6724843
Score = 91.5 bits (100), Expect = 2e-16
Identities = 86/107 (80%), Gaps = 2/107 (2%)
Strand=Plus/Plus
Query 9 GGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTA 68
||||| ||||||||| | ||| |||| | |||||||||| ||||||||||||||||
Sbjct 6179050 GGCTCGCACAGTGTAGCTTGTTTGCAGCCCCGGACATCTAAGGACATCACAGACCTGTTA 6179109
Query 69 TTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115
||| ||||| | || |||||| | |||| | ||||||||||||||
Sbjct 6179110 TTG-CTCAATC-TCGGGTGGCTGAATGCCACTTGTCCCTCTAAGAAG 6179154
>seq182
Length=6978847
Score = 75.2 bits (82), Expect = 2e-11
Identities = 57/66 (86%), Gaps = 1/66 (2%)
Strand=Plus/Minus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
||||||||||||| | ||| |||| ||||||||||||||||||||||||||| || ||
Sbjct 5935400 GTCAGTGTAGCGCTCATGCAGCCCCAGACATCTAAGGGCATCACAGACCTGTTACTG-CT 5935342
Query 75 CAAACT 80
||| ||
Sbjct 5935341 CAATCT 5935336
>seq151
Length=8490631
Score = 75.2 bits (82), Expect = 2e-11
Identities = 78/100 (78%), Gaps = 2/100 (2%)
Strand=Plus/Plus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
|||| ||||| | || ||| |||| |||||||||||||||| ||||||||||||| ||
Sbjct 8357863 GTCACTGTAGTGAGCATGCAGCCCCAGACATCTAAGGGCATCATAGACCTGTTATTG-CT 8357921
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAA 114
||| | || |||||| | ||| | ||||| ||||||
Sbjct 8357922 CAATC-TCGGGTGGCTGAACACCACTTATCCCTGTAAGAA 8357960
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796626253029
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |