Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq792 295 1e-77 seq34 266 6e-69 seq84 255 1e-65 seq176 174 3e-41 seq45 174 3e-41 seq89 161 2e-37 seq273 104 4e-20 seq88 96.9 6e-18 seq96 86.0 1e-14 seq1116 77.0 6e-12 >seq792 Length=881685 Score = 295 bits (326), Expect = 1e-77 Identities = 246/296 (83%), Gaps = 5/296 (2%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||||||||||| Sbjct 189861 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 189802 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACC- 118 | | |||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 189801 ACCATGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAAACGTTAGGT 189742 Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 |||||||||||| ||||||||||| |||||||||||||||||||||||| ||||| || Sbjct 189741 GAATTCTGCTTCACAATGATAGGAAGGGCCGACATCGAAGGATCAAAAAGCGACGTCACT 189682 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238 ||||||||||||| ||||||||||||||||||||||||||||||||| ||||| || Sbjct 189681 ATGAACGCTTGGCCATCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGATACCTCCTGC 189622 Query 239 CTCAAATTTCGAGGGA-CTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||| | | || | |||||||| ||||| | |||||| ||| ||||||| Sbjct 189621 --CAAAACCCAAAAGATCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTC 189568 >seq34 Length=18184965 Score = 266 bits (294), Expect = 6e-69 Identities = 200/234 (85%), Gaps = 1/234 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 |||| ||| | |||||||| | || |||||||||||||||||||||||||||||| Sbjct 6764771 TACTGAGCAGGATTACCATAGCAAACACA-TCATCAGTAGGGTAAAACTAACCTGTCTCA 6764713 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 || ||||||| ||||||||||||||| ||||| |||||||||||||||| |||| || Sbjct 6764712 CGATGGTCTAATCCCAGCTCACGTTCCTTATTAATGGGTGAACAATCCAATGCTTGGTGA 6764653 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 ||||||| || ||||||| ||||||| |||| |||||||||||| | || || |||| Sbjct 6764652 ATTCTGCCTCACAATGATAGTAAGAGCCAACATTGAAGGATCAAAATGTGACATCACTAT 6764593 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234 ||| ||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 6764592 GAAGGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTC 6764539 >seq84 Length=11476687 Score = 255 bits (282), Expect = 1e-65 Identities = 215/263 (82%), Gaps = 1/263 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||| ||| |||||||||||||| ||||||||||||||||| |||| ||| Sbjct 126955 TCATCAGTAGGGTACAACCAACCTGTCTCATGATGGTCTAAACCCAGCTCAGGTTCTCTA 126896 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||| ||||||||| |||| ||||||||||| |||||||||| || || Sbjct 126895 TTAGTGGGTAAACAATCCAT-GCTTGGTAAATTCTGCTTCACAGTGATAGGAAGCGCTGA 126837 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||| ||||||||||||||| | || | |||||| |||||||| ||||| ||||||||| Sbjct 126836 CATTGAAGGATCAAAAAGCGAAGTTGACATGAACTTTTGGCTGCTACAAGACAGTTATCC 126777 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||||||||||| |||||| || | ||| | || | |||||||| ||| Sbjct 126776 CTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGATCGTGAGG 126717 Query 271 CCACACTTTCATGGTTTGTATTC 293 || | |||||| ||| ||||||| Sbjct 126716 CCCCGCTTTCACGGTCTGTATTC 126694 >seq176 Length=7287773 Score = 174 bits (192), Expect = 3e-41 Identities = 118/131 (90%), Gaps = 1/131 (1%) Strand=Plus/Plus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 |||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||| || Sbjct 5475848 CATCAGTAGGATAAAACTAACCTGTCTCATGACGGTCTAATCCCAGCTCATGTTCCCAAT 5475907 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 ||||||||||| |||||||||||| |||||||||||| ||||||||||||||| || Sbjct 5475908 TAGTGGGTGAATAATCCAACGCTTGGTGAATTCTGCTTC-ACATGATAGGAAGAGCCTAC 5475966 Query 152 ATCGAAGGATC 162 || |||||||| Sbjct 5475967 ATGGAAGGATC 5475977 >seq45 Length=16323893 Score = 174 bits (192), Expect = 3e-41 Identities = 140/169 (83%), Gaps = 10/169 (6%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||| ||||||||||||||||||| ||||||||||| ||||| || ||| Sbjct 6457065 TCATCAGTAAGGTAAAACTAACCTGTCTC------GTCTAAACCCAACTCACATTTCCTG 6457118 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 || ||||||||||||||||||| |||||||||||| ||||| ||||||||| | Sbjct 6457119 TT----GGTGAACAATCCAACGCTTGGTGAATTCTGCTTCCCAATGATCGGAAGAGCCAA 6457174 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAA 199 | | |||||||||||||| |||| ||||||||||||||||||||||| Sbjct 6457175 CGTGGAAGGATCAAAAAGGGACGTTTCTATGAACGCTTGGCTGCCACAA 6457223 >seq89 Length=11090170 Score = 161 bits (178), Expect = 2e-37 Identities = 197/264 (75%), Gaps = 5/264 (2%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||| || |||||||||| | ||||||||| |||||||| |||| | || ||| || Sbjct 1025722 TCATCAATAAAGTAAAACTAATCGGTCTCATGAAGGTCTAAAGCCAGTTTACATTCTCTT 1025781 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 | |||| | |||||||||| | ||| ||||||||||| | |||||| | | || Sbjct 1025782 TCAGTGAGAAAACAATCCAATGATTAGTAAATTCTGCTTCCTAACAGTAGGAACAACTGA 1025841 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||| |||| | | |||||||| || |||||||| ||||| ||| |||||||||||| Sbjct 1025842 CATTGAAGCAGCGAAAAGCAAGGTTTATATGAACGTTTGGCCACCAAAAGCCAGTTATCA 1025901 Query 211 CTGTGGTAAC-TTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTA-AAGGATCGATA 268 | ||||||| |||| || ||||| || || ||||| | | || || |||||| | | Sbjct 1025902 ATTTGGTAACTTTTTTTGACACCT-TA--CTTAAATTCCAAAAGATTAGAAGGATTGGGA 1025958 Query 269 GGCCACACTTTCATGGTTTGTATT 292 || | |||||||| || | |||| Sbjct 1025959 GGTCCCACTTTCAGGGCCTTTATT 1025982 >seq273 Length=4704716 Score = 104 bits (114), Expect = 4e-20 Identities = 173/253 (68%), Gaps = 24/253 (9%) Strand=Plus/Minus Query 40 GGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGT 99 |||| || |||||||||||| | ||||||||||| ||||||| |||| |||||| | Sbjct 307911 GGGTGAAGCTAACCTGTCTCGGGCCGGTCTAAACC-AGCTCACCGCCCCTGTTAGTGAGA 307853 Query 100 GAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGG 159 || || | || ||||| || | ||||||| ||| ||| ||||| Sbjct 307852 GATCAGTTCAGCGCTTGGTGAGTCCTGCTTCACAGTGAAAGGCGGAGCC----------- 307804 Query 160 ATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAA 219 ||||| ||||||||||| || |||||||||||||||||| ||||||| Sbjct 307803 -----------ACGTCTCTATGAACGCTGCGCC-CCACAAGCCAGTTATCCCCGTGGTAA 307756 Query 220 CTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTT 279 |||| ||| |||||| || | || | || | | |||||| ||||| | |||| Sbjct 307755 CTTTCCTGACACCTCCTGCTTAGAACCCTAACGGTCCCAGGGATCGCGAGGCCCCGCTTT 307696 Query 280 CATGGTTTGTATT 292 || ||| || ||| Sbjct 307695 CAGGGTCTGCATT 307683 >seq88 Length=11015282 Score = 96.9 bits (106), Expect = 6e-18 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 123 TCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGA 182 |||||||| || ||||||| | | | || |||||||||||| ||| || |||||| Sbjct 2882623 TCTGCTTCACAATAATAGGAAAAACTAATGTCAAAGGATCAAAAAACAATGTTACTATGA 2882682 Query 183 ACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238 || ||||| ||||||||||||| ||||||||||||||||| | |||| || || Sbjct 2882683 ACAGTTGGCCATCACAAGCCAGTTAGCCCTGTGGTAACTTTTCCGACACCACTTGC 2882738 >seq96 Length=10532381 Score = 86.0 bits (94), Expect = 1e-14 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 ||||| ||||||| ||||||| |||| ||||||||||| |||| ||||||||| | Sbjct 7326803 ATTAGAGGGTGAAAAATCCAATGCTTGGTGAATTCTGCTTTACAATGACAGGAAGAGCTG 7326744 Query 150 ACATCGAAGGATCAAAAAGC 169 ||||| |||||||||||||| Sbjct 7326743 ACATCAAAGGATCAAAAAGC 7326724 >seq1116 Length=283205 Score = 77.0 bits (84), Expect = 6e-12 Identities = 74/95 (78%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 200 GCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAA 259 ||||||||||| ||||||||||||||| |||||| || | ||| | || | || Sbjct 118364 GCCAGTTATCCTTGTGGTAACTTTTCTAACACCTCCTGCTTAAAACCCAAATGGTCAGAA 118305 Query 260 GGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 |||| | ||||| |||||||||||| |||||||| Sbjct 118304 GGATTGTGAGGCCCCACTTTCATGGTCTGTATTCA 118270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854207683104