Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09-
20] 22,509 sequences; 4,444,080,527 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq792 295 1e-77
seq34 266 6e-69
seq84 255 1e-65
seq176 174 3e-41
seq45 174 3e-41
seq89 161 2e-37
seq273 104 4e-20
seq88 96.9 6e-18
seq96 86.0 1e-14
seq1116 77.0 6e-12
>seq792
Length=881685
Score = 295 bits (326), Expect = 1e-77
Identities = 246/296 (83%), Gaps = 5/296 (2%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||| ||| | |||||||| | | || |||||||||||||||||||||||||||||
Sbjct 189861 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 189802
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACC- 118
| | |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 189801 ACCATGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAAACGTTAGGT 189742
Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178
|||||||||||| ||||||||||| |||||||||||||||||||||||| ||||| ||
Sbjct 189741 GAATTCTGCTTCACAATGATAGGAAGGGCCGACATCGAAGGATCAAAAAGCGACGTCACT 189682
Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238
||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 189681 ATGAACGCTTGGCCATCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGATACCTCCTGC 189622
Query 239 CTCAAATTTCGAGGGA-CTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
|||| | | || | |||||||| ||||| | |||||| ||| |||||||
Sbjct 189621 --CAAAACCCAAAAGATCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTC 189568
>seq34
Length=18184965
Score = 266 bits (294), Expect = 6e-69
Identities = 200/234 (85%), Gaps = 1/234 (0%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
|||| ||| | |||||||| | || ||||||||||||||||||||||||||||||
Sbjct 6764771 TACTGAGCAGGATTACCATAGCAAACACA-TCATCAGTAGGGTAAAACTAACCTGTCTCA 6764713
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120
|| ||||||| ||||||||||||||| ||||| |||||||||||||||| |||| ||
Sbjct 6764712 CGATGGTCTAATCCCAGCTCACGTTCCTTATTAATGGGTGAACAATCCAATGCTTGGTGA 6764653
Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180
||||||| || ||||||| ||||||| |||| |||||||||||| | || || ||||
Sbjct 6764652 ATTCTGCCTCACAATGATAGTAAGAGCCAACATTGAAGGATCAAAATGTGACATCACTAT 6764593
Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 6764592 GAAGGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTC 6764539
>seq84
Length=11476687
Score = 255 bits (282), Expect = 1e-65
Identities = 215/263 (82%), Gaps = 1/263 (0%)
Strand=Plus/Minus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|||||||||||||| ||| |||||||||||||| ||||||||||||||||| |||| |||
Sbjct 126955 TCATCAGTAGGGTACAACCAACCTGTCTCATGATGGTCTAAACCCAGCTCAGGTTCTCTA 126896
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
||||||||| ||||||||| |||| ||||||||||| |||||||||| || ||
Sbjct 126895 TTAGTGGGTAAACAATCCAT-GCTTGGTAAATTCTGCTTCACAGTGATAGGAAGCGCTGA 126837
Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210
||| ||||||||||||||| | || | |||||| |||||||| ||||| |||||||||
Sbjct 126836 CATTGAAGGATCAAAAAGCGAAGTTGACATGAACTTTTGGCTGCTACAAGACAGTTATCC 126777
Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270
||||||||||||||||| |||||| || | ||| | || | |||||||| |||
Sbjct 126776 CTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGATCGTGAGG 126717
Query 271 CCACACTTTCATGGTTTGTATTC 293
|| | |||||| ||| |||||||
Sbjct 126716 CCCCGCTTTCACGGTCTGTATTC 126694
>seq176
Length=7287773
Score = 174 bits (192), Expect = 3e-41
Identities = 118/131 (90%), Gaps = 1/131 (1%)
Strand=Plus/Plus
Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91
|||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||| ||
Sbjct 5475848 CATCAGTAGGATAAAACTAACCTGTCTCATGACGGTCTAATCCCAGCTCATGTTCCCAAT 5475907
Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151
||||||||||| |||||||||||| |||||||||||| ||||||||||||||| ||
Sbjct 5475908 TAGTGGGTGAATAATCCAACGCTTGGTGAATTCTGCTTC-ACATGATAGGAAGAGCCTAC 5475966
Query 152 ATCGAAGGATC 162
|| ||||||||
Sbjct 5475967 ATGGAAGGATC 5475977
>seq45
Length=16323893
Score = 174 bits (192), Expect = 3e-41
Identities = 140/169 (83%), Gaps = 10/169 (6%)
Strand=Plus/Plus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
||||||||| ||||||||||||||||||| ||||||||||| ||||| || |||
Sbjct 6457065 TCATCAGTAAGGTAAAACTAACCTGTCTC------GTCTAAACCCAACTCACATTTCCTG 6457118
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
|| ||||||||||||||||||| |||||||||||| ||||| ||||||||| |
Sbjct 6457119 TT----GGTGAACAATCCAACGCTTGGTGAATTCTGCTTCCCAATGATCGGAAGAGCCAA 6457174
Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAA 199
| | |||||||||||||| |||| |||||||||||||||||||||||
Sbjct 6457175 CGTGGAAGGATCAAAAAGGGACGTTTCTATGAACGCTTGGCTGCCACAA 6457223
>seq89
Length=11090170
Score = 161 bits (178), Expect = 2e-37
Identities = 197/264 (75%), Gaps = 5/264 (2%)
Strand=Plus/Plus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|||||| || |||||||||| | ||||||||| |||||||| |||| | || ||| ||
Sbjct 1025722 TCATCAATAAAGTAAAACTAATCGGTCTCATGAAGGTCTAAAGCCAGTTTACATTCTCTT 1025781
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
| |||| | |||||||||| | ||| ||||||||||| | |||||| | | ||
Sbjct 1025782 TCAGTGAGAAAACAATCCAATGATTAGTAAATTCTGCTTCCTAACAGTAGGAACAACTGA 1025841
Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210
||| |||| | | |||||||| || |||||||| ||||| ||| ||||||||||||
Sbjct 1025842 CATTGAAGCAGCGAAAAGCAAGGTTTATATGAACGTTTGGCCACCAAAAGCCAGTTATCA 1025901
Query 211 CTGTGGTAAC-TTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTA-AAGGATCGATA 268
| ||||||| |||| || ||||| || || ||||| | | || || |||||| | |
Sbjct 1025902 ATTTGGTAACTTTTTTTGACACCT-TA--CTTAAATTCCAAAAGATTAGAAGGATTGGGA 1025958
Query 269 GGCCACACTTTCATGGTTTGTATT 292
|| | |||||||| || | ||||
Sbjct 1025959 GGTCCCACTTTCAGGGCCTTTATT 1025982
>seq273
Length=4704716
Score = 104 bits (114), Expect = 4e-20
Identities = 173/253 (68%), Gaps = 24/253 (9%)
Strand=Plus/Minus
Query 40 GGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGT 99
|||| || |||||||||||| | ||||||||||| ||||||| |||| |||||| |
Sbjct 307911 GGGTGAAGCTAACCTGTCTCGGGCCGGTCTAAACC-AGCTCACCGCCCCTGTTAGTGAGA 307853
Query 100 GAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGG 159
|| || | || ||||| || | ||||||| ||| ||| |||||
Sbjct 307852 GATCAGTTCAGCGCTTGGTGAGTCCTGCTTCACAGTGAAAGGCGGAGCC----------- 307804
Query 160 ATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAA 219
||||| ||||||||||| || |||||||||||||||||| |||||||
Sbjct 307803 -----------ACGTCTCTATGAACGCTGCGCC-CCACAAGCCAGTTATCCCCGTGGTAA 307756
Query 220 CTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTT 279
|||| ||| |||||| || | || | || | | |||||| ||||| | ||||
Sbjct 307755 CTTTCCTGACACCTCCTGCTTAGAACCCTAACGGTCCCAGGGATCGCGAGGCCCCGCTTT 307696
Query 280 CATGGTTTGTATT 292
|| ||| || |||
Sbjct 307695 CAGGGTCTGCATT 307683
>seq88
Length=11015282
Score = 96.9 bits (106), Expect = 6e-18
Identities = 91/116 (78%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 123 TCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGA 182
|||||||| || ||||||| | | | || |||||||||||| ||| || ||||||
Sbjct 2882623 TCTGCTTCACAATAATAGGAAAAACTAATGTCAAAGGATCAAAAAACAATGTTACTATGA 2882682
Query 183 ACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238
|| ||||| ||||||||||||| ||||||||||||||||| | |||| || ||
Sbjct 2882683 ACAGTTGGCCATCACAAGCCAGTTAGCCCTGTGGTAACTTTTCCGACACCACTTGC 2882738
>seq96
Length=10532381
Score = 86.0 bits (94), Expect = 1e-14
Identities = 67/80 (84%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149
||||| ||||||| ||||||| |||| ||||||||||| |||| ||||||||| |
Sbjct 7326803 ATTAGAGGGTGAAAAATCCAATGCTTGGTGAATTCTGCTTTACAATGACAGGAAGAGCTG 7326744
Query 150 ACATCGAAGGATCAAAAAGC 169
||||| ||||||||||||||
Sbjct 7326743 ACATCAAAGGATCAAAAAGC 7326724
>seq1116
Length=283205
Score = 77.0 bits (84), Expect = 6e-12
Identities = 74/95 (78%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 200 GCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAA 259
||||||||||| ||||||||||||||| |||||| || | ||| | || | ||
Sbjct 118364 GCCAGTTATCCTTGTGGTAACTTTTCTAACACCTCCTGCTTAAAACCCAAATGGTCAGAA 118305
Query 260 GGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294
|||| | ||||| |||||||||||| ||||||||
Sbjct 118304 GGATTGTGAGGCCCCACTTTCATGGTCTGTATTCA 118270
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854207683104
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |