Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq261 161 2e-37 seq151 123 5e-26 seq130 105 1e-20 seq189 82.4 1e-13 seq182 78.8 2e-12 >seq261 Length=5070672 Score = 161 bits (178), Expect = 2e-37 Identities = 193/258 (75%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 2381468 CTTCTTAGAGGGACAAGTGGCATTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 2381525 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||| | || |||||||||| | || || || | Sbjct 2381526 ATGCCCTTAGATGTCCAGGGCTGCATGTGCACTACACTGACTGGCTCAGCGTGTGTCTAC 2381585 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||| ||||||| | | || | | ||||| ||||||| | |||| Sbjct 2381586 CCTACGCCGGCAGGCATGGGTAACCCCTTGAACCCCATTCGTGATGGGGATCAGGGATTG 2381645 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | ||||| |||| || |||||| || ||||| ||| || ||||| Sbjct 2381646 CAATTATTCCCCATGAACGAAGAATTCCCAGTAAGTGCAGGTCATAAGCTTGCAATGATT 2381705 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 2381706 AAGTCCCTGCCCTTTGTA 2381723 >seq151 Length=8490631 Score = 123 bits (136), Expect = 5e-26 Identities = 164/223 (74%), Gaps = 5/223 (2%) Strand=Plus/Minus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| ||||||||||||| |||||||||||||||| |||| ||| || | |||| Sbjct 8357927 AGATTGAG-CAATAACAGGTCTATGATGCCCTTAGATGTCTGGGGCTGCATGCTCACTAC 8357869 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 | |||| | || |||| | | ||| || |||| | ||| || | || || Sbjct 8357868 AGTGACTGGCTCA--GAGTGCCTACCCTACATTGGCAGGTGCAG-TAACCTGTTGAACCT 8357812 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 || ||||| ||||||| | |||||||||||| | | | || ||||||| | |||||| Sbjct 8357811 CTTTCGTGATGGGGATCTGG-ATTGCAATTATTCCCCATGAATGAGGAATTTCCAGTAAG 8357753 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||||| ||| || ||||||| |||||||||||||||| Sbjct 8357752 TGTAGGTCATAAGCTTGCATTGATTAAGTCCCTGCCCTTTGTA 8357710 >seq130 Length=8672310 Score = 105 bits (116), Expect = 1e-20 Identities = 182/262 (69%), Gaps = 17/262 (6%) Strand=Plus/Minus Query 68 CCGGCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTC 126 || ||||||||||||||| | ||| | |||| || | ||||| |||| |||||| Sbjct 3195983 CCAGCTTCTTAGAGGGACAAGTGGCATTCAGCCACCTGA-GATTGAG-CAATTACAGGTG 3195926 Query 127 TGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTC 186 |||||||||||| ||||| |||| |||| | | || |||||| | | || || | Sbjct 3195925 TGTGATGCCCTTCGATGTCTGGGGCTGCACTCAC--TATACTGACTGGCTTAGCGTGTGC 3195868 Query 187 ATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGC 246 | || ||||| ||| || || | | ||||| ||||||| | | Sbjct 3195867 CTACTCTACGCCGGCAGGATTG------------AACCCCATTCGTGATGGGGATTGGGG 3195820 Query 247 ATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTT 306 ||| |||||||| | | | || ||||||| || |||||| ||| ||| | | | | ||| Sbjct 3195819 ATTACAATTATTCCCCATGAATGAGGAATTCCCAGTAAGTGCGGGTCTTAACCTTGTGTT 3195760 Query 307 GATTACGTCCCTGCCCTTTGTA 328 ||||| |||||||||||||||| Sbjct 3195759 GATTAAGTCCCTGCCCTTTGTA 3195738 >seq189 Length=6724843 Score = 82.4 bits (90), Expect = 1e-13 Identities = 143/206 (69%), Gaps = 13/206 (6%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 6179154 CTTCTTAGAGGGACAAGTGGCATTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 6179097 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 ||| |||||||||| | |||| ||| | ||||||||| ||||| || Sbjct 6179096 ATGTCCTTAGATGTCCGGGGCTGCAAACAAGCTACACTGTGCGAGCCTAC---------- 6179047 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||| | |||| | | || | | ||||| ||||| | | |||| Sbjct 6179046 CCTATGCCGGTAGGCGCGAGTAACCCATTGAACCCCATTCGTGATGGGGCTCAGGGATTG 6178987 Query 251 CAATTATTGCTCTTCAACGAGGAATG 276 |||||||| | | | || ||||| || Sbjct 6178986 CAATTATTCCCCATGAATGAGGACTG 6178961 >seq182 Length=6978847 Score = 78.8 bits (86), Expect = 2e-12 Identities = 102/137 (74%), Gaps = 3/137 (2%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| || ||||||||||||||||||||||||||| |||| ||| | ||||||| Sbjct 5935336 AGATTGAG-CAGTAACAGGTCTGTGATGCCCTTAGATGTCTGGGGCTGCATGAGCGCTAC 5935394 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTT-GGCCGGAAGGTCTGGGTAATCTTGTTAAAC 224 |||||| | || | || | | ||||| || || ||| ||||||| | | || | Sbjct 5935395 ACTGACTGGCTCAGCATGTGCCT-ACCTTATGCTGGCAGGCGTGGGTAACCCATTGAACC 5935453 Query 225 TCTGTCGTGCTGGGGAT 241 | ||||| ||||||| Sbjct 5935454 CCATTCGTGATGGGGAT 5935470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946986794752