Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09-
20] 22,509 sequences; 4,444,080,527 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq261 161 2e-37
seq151 123 5e-26
seq130 105 1e-20
seq189 82.4 1e-13
seq182 78.8 2e-12
>seq261
Length=5070672
Score = 161 bits (178), Expect = 2e-37
Identities = 193/258 (75%), Gaps = 3/258 (1%)
Strand=Plus/Plus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| | ||| | |||| || | ||||| ||||||||||||||||
Sbjct 2381468 CTTCTTAGAGGGACAAGTGGCATTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 2381525
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||||||||| | |||| ||| | || |||||||||| | || || || |
Sbjct 2381526 ATGCCCTTAGATGTCCAGGGCTGCATGTGCACTACACTGACTGGCTCAGCGTGTGTCTAC 2381585
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
||| ||||| ||| ||||||| | | || | | ||||| ||||||| | ||||
Sbjct 2381586 CCTACGCCGGCAGGCATGGGTAACCCCTTGAACCCCATTCGTGATGGGGATCAGGGATTG 2381645
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
|||||||| | | | ||||| |||| || |||||| || ||||| ||| || |||||
Sbjct 2381646 CAATTATTCCCCATGAACGAAGAATTCCCAGTAAGTGCAGGTCATAAGCTTGCAATGATT 2381705
Query 311 ACGTCCCTGCCCTTTGTA 328
| ||||||||||||||||
Sbjct 2381706 AAGTCCCTGCCCTTTGTA 2381723
>seq151
Length=8490631
Score = 123 bits (136), Expect = 5e-26
Identities = 164/223 (74%), Gaps = 5/223 (2%)
Strand=Plus/Minus
Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165
|| ||||| ||||||||||||| |||||||||||||||| |||| ||| || | ||||
Sbjct 8357927 AGATTGAG-CAATAACAGGTCTATGATGCCCTTAGATGTCTGGGGCTGCATGCTCACTAC 8357869
Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225
| |||| | || |||| | | ||| || |||| | ||| || | || ||
Sbjct 8357868 AGTGACTGGCTCA--GAGTGCCTACCCTACATTGGCAGGTGCAG-TAACCTGTTGAACCT 8357812
Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285
|| ||||| ||||||| | |||||||||||| | | | || ||||||| | ||||||
Sbjct 8357811 CTTTCGTGATGGGGATCTGG-ATTGCAATTATTCCCCATGAATGAGGAATTTCCAGTAAG 8357753
Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
| ||||| ||| || ||||||| ||||||||||||||||
Sbjct 8357752 TGTAGGTCATAAGCTTGCATTGATTAAGTCCCTGCCCTTTGTA 8357710
>seq130
Length=8672310
Score = 105 bits (116), Expect = 1e-20
Identities = 182/262 (69%), Gaps = 17/262 (6%)
Strand=Plus/Minus
Query 68 CCGGCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTC 126
|| ||||||||||||||| | ||| | |||| || | ||||| |||| ||||||
Sbjct 3195983 CCAGCTTCTTAGAGGGACAAGTGGCATTCAGCCACCTGA-GATTGAG-CAATTACAGGTG 3195926
Query 127 TGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTC 186
|||||||||||| ||||| |||| |||| | | || |||||| | | || || |
Sbjct 3195925 TGTGATGCCCTTCGATGTCTGGGGCTGCACTCAC--TATACTGACTGGCTTAGCGTGTGC 3195868
Query 187 ATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGC 246
| || ||||| ||| || || | | ||||| ||||||| | |
Sbjct 3195867 CTACTCTACGCCGGCAGGATTG------------AACCCCATTCGTGATGGGGATTGGGG 3195820
Query 247 ATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTT 306
||| |||||||| | | | || ||||||| || |||||| ||| ||| | | | | |||
Sbjct 3195819 ATTACAATTATTCCCCATGAATGAGGAATTCCCAGTAAGTGCGGGTCTTAACCTTGTGTT 3195760
Query 307 GATTACGTCCCTGCCCTTTGTA 328
||||| ||||||||||||||||
Sbjct 3195759 GATTAAGTCCCTGCCCTTTGTA 3195738
>seq189
Length=6724843
Score = 82.4 bits (90), Expect = 1e-13
Identities = 143/206 (69%), Gaps = 13/206 (6%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| | ||| | |||| || | ||||| ||||||||||||||||
Sbjct 6179154 CTTCTTAGAGGGACAAGTGGCATTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 6179097
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
||| |||||||||| | |||| ||| | ||||||||| ||||| ||
Sbjct 6179096 ATGTCCTTAGATGTCCGGGGCTGCAAACAAGCTACACTGTGCGAGCCTAC---------- 6179047
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
||| ||||| ||| | |||| | | || | | ||||| ||||| | | ||||
Sbjct 6179046 CCTATGCCGGTAGGCGCGAGTAACCCATTGAACCCCATTCGTGATGGGGCTCAGGGATTG 6178987
Query 251 CAATTATTGCTCTTCAACGAGGAATG 276
|||||||| | | | || ||||| ||
Sbjct 6178986 CAATTATTCCCCATGAATGAGGACTG 6178961
>seq182
Length=6978847
Score = 78.8 bits (86), Expect = 2e-12
Identities = 102/137 (74%), Gaps = 3/137 (2%)
Strand=Plus/Plus
Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165
|| ||||| || ||||||||||||||||||||||||||| |||| ||| | |||||||
Sbjct 5935336 AGATTGAG-CAGTAACAGGTCTGTGATGCCCTTAGATGTCTGGGGCTGCATGAGCGCTAC 5935394
Query 166 ACTGACAGAGCCAACGAGTTCATCACCTT-GGCCGGAAGGTCTGGGTAATCTTGTTAAAC 224
|||||| | || | || | | ||||| || || ||| ||||||| | | || |
Sbjct 5935395 ACTGACTGGCTCAGCATGTGCCT-ACCTTATGCTGGCAGGCGTGGGTAACCCATTGAACC 5935453
Query 225 TCTGTCGTGCTGGGGAT 241
| ||||| |||||||
Sbjct 5935454 CCATTCGTGATGGGGAT 5935470
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 946986794752
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |