Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq2 333 9e-89 seq59 253 7e-65 seq307 179 1e-42 seq4 154 5e-35 seq16 127 7e-27 seq7 125 2e-26 seq792 107 6e-21 seq53 93.3 1e-16 seq74 86.0 2e-14 seq89 80.6 9e-13 >seq2 Length=38460149 Score = 333 bits (368), Expect = 9e-89 Identities = 252/297 (85%), Gaps = 0/297 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 || ||||||||||||||||||||| ||| ||||| | | |||||||||||||||||| Sbjct 16140836 CTTCCACTTATTCTACACCTCTCATGTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAA 16140895 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||||||| ||||| |||||| || | |||| | |||||||| ||| |||| || || Sbjct 16140896 CAGGGTCTTTTTTCCTTGCTGATCCCACAAAGCTCATTCCCTTGACTGCAGTTTTGCCAG 16140955 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 |||| | ||||||||||||||||| | || ||||| ||||| | ||||||||||||||| Sbjct 16140956 GTAGTGGGTAGGGACAGTGGGAATCCCTTTCATCCACTCATGTGTGTCACTAATTAGATG 16141015 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 || |||||||||||||||||||| ||| |||||||||||||||| |||| | || || Sbjct 16141016 ACAAGGCATTTGGCTACCTTAAGTGAGCCATAGTTACTCCCGCCATTTATCTGCAGTTCA 16141075 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||| |||||||||||||||||| |||||||||||| || ||||||| Sbjct 16141076 TTGAATTTCTTCACGTTGACATTCAGAGCACTGAGCAGAAATCACACTGTGTCAACA 16141132 >seq59 Length=13420349 Score = 253 bits (280), Expect = 7e-65 Identities = 227/282 (80%), Gaps = 6/282 (2%) Strand=Plus/Plus Query 242 ACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 301 |||| || |||||| ||| | | ||||| | || ||||||||||||||||||||||| Sbjct 6192151 ACTTTTT-TACACCCCTCTTGCCTCTTCACCACATCAGACTAGAGTCAAGCTCAACAGGG 6192209 Query 302 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 361 |||||||| | ||||||||| |||| ||| || ||| |||||||||| ||| |||| | Sbjct 6192210 TCTTCTTTACTTGCTGATTCCACCAATCCCATTTCCTCAGCTGTGGTTTTGCTGGATAAT 6192269 Query 362 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 421 | |||||||||||||||||||||| ||| |||||| | ||||||||||| ||| || Sbjct 6192270 TGGTAGGGACAGTGGGAATCTCGTTGATCTATTCATTCATGTCACTAATTATATGTTCAG 6192329 Query 422 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 481 |||||||||| | |||||||||||| |||| || || |||| | | ||| |||| Sbjct 6192330 GCATTTGGCTTCGTTAAGAGAGTCACAGTT-CTGCC----ATTACTCACACTTCAATGAA 6192384 Query 482 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACAT 523 ||||| ||||| | || ||||||||||||||||||||||||| Sbjct 6192385 TTTCTCCACTTAGGCACTCAGAGCACTGGGCAGAAATCACAT 6192426 Score = 91.5 bits (100), Expect = 5e-16 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 329 CCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAA 388 ||| || ||||||||||||||| ||| |||| | | ||||||||||||||||||| || | Sbjct 6191711 CCCATTTCCTTGGCTGTGGTTTTGCTTGATAATTGGTAGGGACAGTGGGAATCTCCTTGA 6191770 Query 389 TCCATTCATGCGCGTCACTAATT 411 || |||||| | |||||||||| Sbjct 6191771 TCTATTCATTCATGTCACTAATT 6191793 >seq307 Length=4377737 Score = 179 bits (198), Expect = 1e-42 Identities = 119/132 (90%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 402 GTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCG 461 ||||||||||||||||||| ||||||||| ||||| |||||||||||||||||| |||| Sbjct 1928632 GTCACTAATTAGATGACGAAGCATTTGGCAACCTTTAGAGAGTCATAGTTACTCTTGCCG 1928573 Query 462 TTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCAC 521 ||| || || ||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1928572 TTTGCCTGCACTTCATTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCAC 1928513 Query 522 ATTGCGTCAACA 533 || ||||||| Sbjct 1928512 ATCATGTCAACA 1928501 >seq4 Length=35520712 Score = 154 bits (170), Expect = 5e-35 Identities = 140/176 (80%), Gaps = 3/176 (2%) Strand=Plus/Plus Query 236 GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 295 ||||| ||||||||||||||| ||| ||| ||||| | | | || ||| || ||||||| Sbjct 13151360 GCTCCTACTTATTCTACACCTTTCAGGTCTCTTCACCATGACAGATTAGTGTTAAGCTCA 13151419 Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355 |||||||||||||| ||| | |||| |||||||| |||||| || |||||||| ||| Sbjct 13151420 ACAGGGTCTTCTTTTCCCCC---TTCCACCAAGCCCATTCCCTAGGTTGTGGTTTAGCTG 13151476 Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATT 411 ||| |||| ||| | || | |||||| ||| |||||||||| || | ||||||| Sbjct 13151477 GATTGTAGTTAGAGTTAGGGAGAATCTTGTTCATCCATTCATTTGCATGACTAATT 13151532 >seq16 Length=23094338 Score = 127 bits (140), Expect = 7e-27 Identities = 136/178 (76%), Gaps = 5/178 (3%) Strand=Plus/Plus Query 343 TGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCG 402 ||||||||| ||||| ||| || | | ||| | ||| | | ||||| ||||| | Sbjct 5629969 TGTGGTTTCATCAGATAATAGGTAAG-AGAGTAGAAATACCATCCATCCACACATGCATG 5630027 Query 403 TCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGT 462 | ||||||||||| | ||||||||| |||||||| |||||||||||| ||| | | Sbjct 5630028 T----AATTAGATGACAAAGCATTTGGCCACCTTAAGCAAGTCATAGTTACACCCATCAT 5630083 Query 463 TTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520 ||||| | |||| |||||||||| ||||||||| ||| || ||| ||||||||||| Sbjct 5630084 TTACCTGGGCTTCTGTGAATTTCTTTACTTTGACACTCAAAGTACTAGGCAGAAATCA 5630141 >seq7 Length=29939927 Score = 125 bits (138), Expect = 2e-26 Identities = 164/225 (73%), Gaps = 18/225 (8%) Strand=Plus/Plus Query 283 AGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGC 342 ||||| ||| |||||||||||||| || | || ||| | ||||||| || || |||| Sbjct 15480515 AGAGTTAAGTTCAACAGGGTCTTCCC-CCACTCTTATT--GTCAAGCCCATTGCCATGGC 15480571 Query 343 TGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCG 402 ||||||||| || | ||| || || |||||| | |||| ||| |||||| || || Sbjct 15480572 TGTGGTTTCACTGGGTAGCAGGGAGA-ACAGTGAGGATCTTGTTCTTCCATTTTTGGGCA 15480630 Query 403 TCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGT 462 | | |||||||||| || ||||||| || |||||||||||||||||||| Sbjct 15480631 TAATGAATTAGATGAT-AGAATATTGGCTATCTCAAGAGAGTCATAGTTACTCC------ 15480683 Query 463 TTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCAC 507 | ||| ||| ||||||||||||||| |||||||| || Sbjct 15480684 -------CACTTCATTGGATTTCTTCACTTTGATATTCAGAGTAC 15480721 >seq792 Length=881685 Score = 107 bits (118), Expect = 6e-21 Identities = 88/107 (82%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| |||| | ||||| ||||||||||||| Sbjct 189534 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTATGACACCTGCGTTACC 189475 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||| |||| ||| ||||||||| |||||||| |||||| || |||| Sbjct 189474 GTTTGACAGGTGTACCGCCCCAGTCAAACTCCTCACCTGGCACTGTC 189428 >seq53 Length=14998777 Score = 93.3 bits (102), Expect = 1e-16 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 294 CAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 353 ||||||||||||| |||||| |||||||| | | ||| ||||||| || ||| |||| | Sbjct 3318354 CAACAGGGTCTTCCTTCCCCACTGATTCCACTAGGCCTCTTCCCTTAGCAGTGCTTTCTC 3318295 Query 354 TAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATT 394 | || || || |||||||||||||||| | || |||| || Sbjct 3318294 TGGACAGAAGGTAGGGACAGTGGGAATTTAATTTATCCTTT 3318254 >seq74 Length=12003515 Score = 86.0 bits (94), Expect = 2e-14 Identities = 84/107 (79%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| | |||| ||||||| |||| ||| ||||||||||||||| |||| Sbjct 8071089 CTTCTGCTCCAT-GGAGGTTTCTGTCCTCCCTGAACTTACCTTAGGACACCTGCATTATC 8071031 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| |||| ||| || |||||| ||||||||| ||||| || |||| Sbjct 8071030 ATTTGACAGGTGTACCACCCCAGTCAAACTCCCTACCTGGCACTGTC 8070984 >seq89 Length=11090170 Score = 80.6 bits (88), Expect = 9e-13 Identities = 78/98 (80%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 434 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTT 493 ||||| ||| |||||||| || | ||||||| || || |||||||||||||| ||| Sbjct 1026385 CTTAACAGAATCATAGTTTTTCTA-CAGTTTACCTGC-CTACGTTGAATTTCTTCATTTT 1026442 Query 494 GACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 |||||| || ||| | |||| |||||||||| ||||| Sbjct 1026443 GACATTTAGTGCATTAGGCAAAAATCACATTATGTCAA 1026480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634831932832