Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09-
20] 22,509 sequences; 4,444,080,527 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq2 333 9e-89
seq59 253 7e-65
seq307 179 1e-42
seq4 154 5e-35
seq16 127 7e-27
seq7 125 2e-26
seq792 107 6e-21
seq53 93.3 1e-16
seq74 86.0 2e-14
seq89 80.6 9e-13
>seq2
Length=38460149
Score = 333 bits (368), Expect = 9e-89
Identities = 252/297 (85%), Gaps = 0/297 (0%)
Strand=Plus/Plus
Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296
|| ||||||||||||||||||||| ||| ||||| | | ||||||||||||||||||
Sbjct 16140836 CTTCCACTTATTCTACACCTCTCATGTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAA 16140895
Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356
||||||||| ||||| |||||| || | |||| | |||||||| ||| |||| || ||
Sbjct 16140896 CAGGGTCTTTTTTCCTTGCTGATCCCACAAAGCTCATTCCCTTGACTGCAGTTTTGCCAG 16140955
Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416
|||| | ||||||||||||||||| | || ||||| ||||| | |||||||||||||||
Sbjct 16140956 GTAGTGGGTAGGGACAGTGGGAATCCCTTTCATCCACTCATGTGTGTCACTAATTAGATG 16141015
Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476
|| |||||||||||||||||||| ||| |||||||||||||||| |||| | || ||
Sbjct 16141016 ACAAGGCATTTGGCTACCTTAAGTGAGCCATAGTTACTCCCGCCATTTATCTGCAGTTCA 16141075
Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
|||||||||||||| |||||||||||||||||| |||||||||||| || |||||||
Sbjct 16141076 TTGAATTTCTTCACGTTGACATTCAGAGCACTGAGCAGAAATCACACTGTGTCAACA 16141132
>seq59
Length=13420349
Score = 253 bits (280), Expect = 7e-65
Identities = 227/282 (80%), Gaps = 6/282 (2%)
Strand=Plus/Plus
Query 242 ACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 301
|||| || |||||| ||| | | ||||| | || |||||||||||||||||||||||
Sbjct 6192151 ACTTTTT-TACACCCCTCTTGCCTCTTCACCACATCAGACTAGAGTCAAGCTCAACAGGG 6192209
Query 302 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 361
|||||||| | ||||||||| |||| ||| || ||| |||||||||| ||| |||| |
Sbjct 6192210 TCTTCTTTACTTGCTGATTCCACCAATCCCATTTCCTCAGCTGTGGTTTTGCTGGATAAT 6192269
Query 362 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 421
| |||||||||||||||||||||| ||| |||||| | ||||||||||| ||| ||
Sbjct 6192270 TGGTAGGGACAGTGGGAATCTCGTTGATCTATTCATTCATGTCACTAATTATATGTTCAG 6192329
Query 422 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 481
|||||||||| | |||||||||||| |||| || || |||| | | ||| ||||
Sbjct 6192330 GCATTTGGCTTCGTTAAGAGAGTCACAGTT-CTGCC----ATTACTCACACTTCAATGAA 6192384
Query 482 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACAT 523
||||| ||||| | || |||||||||||||||||||||||||
Sbjct 6192385 TTTCTCCACTTAGGCACTCAGAGCACTGGGCAGAAATCACAT 6192426
Score = 91.5 bits (100), Expect = 5e-16
Identities = 70/83 (84%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 329 CCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAA 388
||| || ||||||||||||||| ||| |||| | | ||||||||||||||||||| || |
Sbjct 6191711 CCCATTTCCTTGGCTGTGGTTTTGCTTGATAATTGGTAGGGACAGTGGGAATCTCCTTGA 6191770
Query 389 TCCATTCATGCGCGTCACTAATT 411
|| |||||| | ||||||||||
Sbjct 6191771 TCTATTCATTCATGTCACTAATT 6191793
>seq307
Length=4377737
Score = 179 bits (198), Expect = 1e-42
Identities = 119/132 (90%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 402 GTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCG 461
||||||||||||||||||| ||||||||| ||||| |||||||||||||||||| ||||
Sbjct 1928632 GTCACTAATTAGATGACGAAGCATTTGGCAACCTTTAGAGAGTCATAGTTACTCTTGCCG 1928573
Query 462 TTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCAC 521
||| || || ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1928572 TTTGCCTGCACTTCATTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCAC 1928513
Query 522 ATTGCGTCAACA 533
|| |||||||
Sbjct 1928512 ATCATGTCAACA 1928501
>seq4
Length=35520712
Score = 154 bits (170), Expect = 5e-35
Identities = 140/176 (80%), Gaps = 3/176 (2%)
Strand=Plus/Plus
Query 236 GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 295
||||| ||||||||||||||| ||| ||| ||||| | | | || ||| || |||||||
Sbjct 13151360 GCTCCTACTTATTCTACACCTTTCAGGTCTCTTCACCATGACAGATTAGTGTTAAGCTCA 13151419
Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355
|||||||||||||| ||| | |||| |||||||| |||||| || |||||||| |||
Sbjct 13151420 ACAGGGTCTTCTTTTCCCCC---TTCCACCAAGCCCATTCCCTAGGTTGTGGTTTAGCTG 13151476
Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATT 411
||| |||| ||| | || | |||||| ||| |||||||||| || | |||||||
Sbjct 13151477 GATTGTAGTTAGAGTTAGGGAGAATCTTGTTCATCCATTCATTTGCATGACTAATT 13151532
>seq16
Length=23094338
Score = 127 bits (140), Expect = 7e-27
Identities = 136/178 (76%), Gaps = 5/178 (3%)
Strand=Plus/Plus
Query 343 TGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCG 402
||||||||| ||||| ||| || | | ||| | ||| | | ||||| ||||| |
Sbjct 5629969 TGTGGTTTCATCAGATAATAGGTAAG-AGAGTAGAAATACCATCCATCCACACATGCATG 5630027
Query 403 TCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGT 462
| ||||||||||| | ||||||||| |||||||| |||||||||||| ||| | |
Sbjct 5630028 T----AATTAGATGACAAAGCATTTGGCCACCTTAAGCAAGTCATAGTTACACCCATCAT 5630083
Query 463 TTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520
||||| | |||| |||||||||| ||||||||| ||| || ||| |||||||||||
Sbjct 5630084 TTACCTGGGCTTCTGTGAATTTCTTTACTTTGACACTCAAAGTACTAGGCAGAAATCA 5630141
>seq7
Length=29939927
Score = 125 bits (138), Expect = 2e-26
Identities = 164/225 (73%), Gaps = 18/225 (8%)
Strand=Plus/Plus
Query 283 AGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGC 342
||||| ||| |||||||||||||| || | || ||| | ||||||| || || ||||
Sbjct 15480515 AGAGTTAAGTTCAACAGGGTCTTCCC-CCACTCTTATT--GTCAAGCCCATTGCCATGGC 15480571
Query 343 TGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCG 402
||||||||| || | ||| || || |||||| | |||| ||| |||||| || ||
Sbjct 15480572 TGTGGTTTCACTGGGTAGCAGGGAGA-ACAGTGAGGATCTTGTTCTTCCATTTTTGGGCA 15480630
Query 403 TCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGT 462
| | |||||||||| || ||||||| || ||||||||||||||||||||
Sbjct 15480631 TAATGAATTAGATGAT-AGAATATTGGCTATCTCAAGAGAGTCATAGTTACTCC------ 15480683
Query 463 TTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCAC 507
| ||| ||| ||||||||||||||| |||||||| ||
Sbjct 15480684 -------CACTTCATTGGATTTCTTCACTTTGATATTCAGAGTAC 15480721
>seq792
Length=881685
Score = 107 bits (118), Expect = 6e-21
Identities = 88/107 (82%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
||| ||||| || |||| ||||||| |||| |||| | ||||| |||||||||||||
Sbjct 189534 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTATGACACCTGCGTTACC 189475
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113
|||| |||| ||| ||||||||| |||||||| |||||| || ||||
Sbjct 189474 GTTTGACAGGTGTACCGCCCCAGTCAAACTCCTCACCTGGCACTGTC 189428
>seq53
Length=14998777
Score = 93.3 bits (102), Expect = 1e-16
Identities = 81/101 (80%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 294 CAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 353
||||||||||||| |||||| |||||||| | | ||| ||||||| || ||| |||| |
Sbjct 3318354 CAACAGGGTCTTCCTTCCCCACTGATTCCACTAGGCCTCTTCCCTTAGCAGTGCTTTCTC 3318295
Query 354 TAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATT 394
| || || || |||||||||||||||| | || |||| ||
Sbjct 3318294 TGGACAGAAGGTAGGGACAGTGGGAATTTAATTTATCCTTT 3318254
>seq74
Length=12003515
Score = 86.0 bits (94), Expect = 2e-14
Identities = 84/107 (79%), Gaps = 1/107 (1%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
||| ||||| | |||| ||||||| |||| ||| ||||||||||||||| ||||
Sbjct 8071089 CTTCTGCTCCAT-GGAGGTTTCTGTCCTCCCTGAACTTACCTTAGGACACCTGCATTATC 8071031
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113
||| |||| ||| || |||||| ||||||||| ||||| || ||||
Sbjct 8071030 ATTTGACAGGTGTACCACCCCAGTCAAACTCCCTACCTGGCACTGTC 8070984
>seq89
Length=11090170
Score = 80.6 bits (88), Expect = 9e-13
Identities = 78/98 (80%), Gaps = 2/98 (2%)
Strand=Plus/Plus
Query 434 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTT 493
||||| ||| |||||||| || | ||||||| || || |||||||||||||| |||
Sbjct 1026385 CTTAACAGAATCATAGTTTTTCTA-CAGTTTACCTGC-CTACGTTGAATTTCTTCATTTT 1026442
Query 494 GACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531
|||||| || ||| | |||| |||||||||| |||||
Sbjct 1026443 GACATTTAGTGCATTAGGCAAAAATCACATTATGTCAA 1026480
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1634831932832
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |