Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq2336 93.3 7e-17 seq150 82.4 1e-13 seq329 78.8 2e-12 seq1762 75.2 2e-11 seq62 75.2 2e-11 seq34 73.4 6e-11 >seq2336 Length=18359 Score = 93.3 bits (102), Expect = 7e-17 Identities = 96/123 (78%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 585 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAAGAGCCAAT 642 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||| ||||||||| |||||| || |||| ||||| |||||||||||| | ||| Sbjct 643 GAGGCGAAGATACCATCTGTTGGATTGTGATTGAATGCCTCAAAGTCAGAATCCCTCCCA 702 Query 121 GAA 123 ||| Sbjct 703 GAA 705 >seq150 Length=8182920 Score = 82.4 bits (90), Expect = 1e-13 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 45 TGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAA 104 ||||||| || || || | |||||||||||||| ||||||||||||||| ||||||| Sbjct 2802137 TGTCTGAGGAGCCAATGGGGTGAAGCTACCATCTGTGGGATTATGGCTGAACACCTCTAA 2802196 Query 105 GTCAGAATCC 114 |||||||||| Sbjct 2802197 GTCAGAATCC 2802206 >seq329 Length=4079841 Score = 78.8 bits (86), Expect = 2e-12 Identities = 67/83 (81%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 31 TTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGG 90 ||||| | || | || |||| || || || |||||||||||||||| |||||||| Sbjct 3447090 TTGGTGTATGTGCTTGGCTGAGGAGCCAATGGGGCGAAGCTACCATCTGTGGGATTATGA 3447149 Query 91 CTGAACGCCTCTAAGTCAGAATC 113 |||||| |||||||||||||||| Sbjct 3447150 CTGAACACCTCTAAGTCAGAATC 3447172 >seq1762 Length=51274 Score = 75.2 bits (82), Expect = 2e-11 Identities = 67/84 (80%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 31 TTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGG 90 ||||| | | || || |||| || || || | |||||||||||||| |||||||| Sbjct 3335 TTGGTGTATACGCTTGGCTGAGGAGCCAATGGGGTGAAGCTACCATCTGTGGGATTATGA 3276 Query 91 CTGAACGCCTCTAAGTCAGAATCC 114 ||||| |||||||||||||||||| Sbjct 3275 CTGAATGCCTCTAAGTCAGAATCC 3252 >seq62 Length=13038768 Score = 75.2 bits (82), Expect = 2e-11 Identities = 62/76 (82%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 39 TGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGC 98 || || || |||| || || || |||||||||||||||| |||||| | ||||| || Sbjct 13034902 TGTGGTTGGCTGAGGAGCCAATGGGGCGAAGCTACCATCTGTGGGATTAAGACTGAAAGC 13034843 Query 99 CTCTAAGTCAGAATCC 114 |||||||||||||||| Sbjct 13034842 CTCTAAGTCAGAATCC 13034827 >seq34 Length=18184965 Score = 73.4 bits (80), Expect = 6e-11 Identities = 89/119 (75%), Gaps = 2/119 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| |||||||||||| | |||||| ||||| | || || |||| || || | Sbjct 6764769 GTAGGAGAGGAACCGCAGG-TTCAGACATTTTGGTGTATGTTCTTGGCTGAGGAGTCAAT 6764827 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCC 119 | || |||||||||||| |||||||| |||| | |||||||||||||||| |||| Sbjct 6764828 GAGGCTAAGCTACCATCTCTGGGATTATGACTGAGCATCTCTAAGTCAGAATCC-TGCC 6764885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819021368576