Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09-
20] 22,509 sequences; 4,444,080,527 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq2336 93.3 7e-17
seq150 82.4 1e-13
seq329 78.8 2e-12
seq1762 75.2 2e-11
seq62 75.2 2e-11
seq34 73.4 6e-11
>seq2336
Length=18359
Score = 93.3 bits (102), Expect = 7e-17
Identities = 96/123 (78%), Gaps = 2/123 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| | |||||| | ||||| | || | || |||| || || |
Sbjct 585 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAAGAGCCAAT 642
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||| ||||||||| |||||| || |||| ||||| |||||||||||| | |||
Sbjct 643 GAGGCGAAGATACCATCTGTTGGATTGTGATTGAATGCCTCAAAGTCAGAATCCCTCCCA 702
Query 121 GAA 123
|||
Sbjct 703 GAA 705
>seq150
Length=8182920
Score = 82.4 bits (90), Expect = 1e-13
Identities = 60/70 (86%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 45 TGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAA 104
||||||| || || || | |||||||||||||| ||||||||||||||| |||||||
Sbjct 2802137 TGTCTGAGGAGCCAATGGGGTGAAGCTACCATCTGTGGGATTATGGCTGAACACCTCTAA 2802196
Query 105 GTCAGAATCC 114
||||||||||
Sbjct 2802197 GTCAGAATCC 2802206
>seq329
Length=4079841
Score = 78.8 bits (86), Expect = 2e-12
Identities = 67/83 (81%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 31 TTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGG 90
||||| | || | || |||| || || || |||||||||||||||| ||||||||
Sbjct 3447090 TTGGTGTATGTGCTTGGCTGAGGAGCCAATGGGGCGAAGCTACCATCTGTGGGATTATGA 3447149
Query 91 CTGAACGCCTCTAAGTCAGAATC 113
|||||| ||||||||||||||||
Sbjct 3447150 CTGAACACCTCTAAGTCAGAATC 3447172
>seq1762
Length=51274
Score = 75.2 bits (82), Expect = 2e-11
Identities = 67/84 (80%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 31 TTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGG 90
||||| | | || || |||| || || || | |||||||||||||| ||||||||
Sbjct 3335 TTGGTGTATACGCTTGGCTGAGGAGCCAATGGGGTGAAGCTACCATCTGTGGGATTATGA 3276
Query 91 CTGAACGCCTCTAAGTCAGAATCC 114
||||| ||||||||||||||||||
Sbjct 3275 CTGAATGCCTCTAAGTCAGAATCC 3252
>seq62
Length=13038768
Score = 75.2 bits (82), Expect = 2e-11
Identities = 62/76 (82%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 39 TGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGC 98
|| || || |||| || || || |||||||||||||||| |||||| | ||||| ||
Sbjct 13034902 TGTGGTTGGCTGAGGAGCCAATGGGGCGAAGCTACCATCTGTGGGATTAAGACTGAAAGC 13034843
Query 99 CTCTAAGTCAGAATCC 114
||||||||||||||||
Sbjct 13034842 CTCTAAGTCAGAATCC 13034827
>seq34
Length=18184965
Score = 73.4 bits (80), Expect = 6e-11
Identities = 89/119 (75%), Gaps = 2/119 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||| |||||||||||| | |||||| ||||| | || || |||| || || |
Sbjct 6764769 GTAGGAGAGGAACCGCAGG-TTCAGACATTTTGGTGTATGTTCTTGGCTGAGGAGTCAAT 6764827
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCC 119
| || |||||||||||| |||||||| |||| | |||||||||||||||| ||||
Sbjct 6764828 GAGGCTAAGCTACCATCTCTGGGATTATGACTGAGCATCTCTAAGTCAGAATCC-TGCC 6764885
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 819021368576
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |