Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09-
20] 22,509 sequences; 4,444,080,527 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq1130 194 5e-47
seq36 194 5e-47
seq199 179 1e-42
seq89 159 1e-36
seq11 109 2e-21
seq125 105 2e-20
seq659 100 9e-19
seq28 100 9e-19
seq1139 89.7 2e-15
seq569 82.4 2e-13
>seq1130
Length=266821
Score = 194 bits (214), Expect = 5e-47
Identities = 175/218 (80%), Gaps = 9/218 (4%)
Strand=Plus/Minus
Query 4 CTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCC 62
||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||||||
Sbjct 72981 CTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTCC 72922
Query 63 CCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 122
||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 72921 CCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCTGTTTT 72862
Query 123 TCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGG 182
|||| || |||||| | ||| ||||||| ||| ||| | || || | ||||||| | |
Sbjct 72861 TCAGCCTTCCTCTCTGTAATTGAACCCTCATTTCCCATCACTTGTGGTCACCATGGAATG 72802
Query 183 CCACTAT----CCTACCATCGAAAGTTGATAGGGCAGA 216
||| || |||| ||||||||||||||||
Sbjct 72801 ----TATGGTGATTAGCATCAGAAGTTGATAGGGCAGA 72768
>seq36
Length=17889389
Score = 194 bits (214), Expect = 5e-47
Identities = 173/214 (81%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 3 ACTCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61
|||||||||||||||| | || |||||||||| ||| ||||| ||||||||||
Sbjct 17059063 ACTCATTCCAATTACAGGGCCTTGAAAGAGCCCTATATTGTTATTTTGCTTCACTACCTC 17059122
Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121
| || || |||| ||||||||||| ||||||||||||| | |||||||| ||||| |||
Sbjct 17059123 CTCG-GTGGGGAGTGGGTAATTTGTGCGCCTGCTGCCTGCTTTGGATGTAGTAGCTATTT 17059181
Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181
|| ||||||||||| ||||||||||||| | | ||| |||||||| | ||||||||||
Sbjct 17059182 CTTGGGCTCCCTCTCTGGAATCGAACCCTGACTGCCCATTACCCGTGGTCACCATGGTAG 17059241
Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAG 215
|| |||||||| ||||||||||||||||
Sbjct 17059242 GCATGGTAACTACCATCTAAAGTTGATAGGGCAG 17059275
Score = 127 bits (140), Expect = 6e-27
Identities = 123/154 (80%), Gaps = 8/154 (5%)
Strand=Plus/Plus
Query 341 TTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA-AGG----TACTATC 395
|| |||||||||||||||||||||||||| |||||||| || | | ||| || | |
Sbjct 17059418 TTGGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTGGGAGAGGAGCAAACAACC 17059477
Query 396 AAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATAC 455
||| ||| | |||||||||||||||||||| ||||||||||||| | || | | |
Sbjct 17059478 AAAGGAACCAAAACTGATTTAATGAGCCATT--CAGTTTCACTGTA-CCACTGTTCCTGC 17059534
Query 456 TTAGACATGCATGGCTTAATCTTTGAGACAAGCA 489
||||||| | ||||||| |||||||||||| |||
Sbjct 17059535 TTAGACAAGGATGGCTTGATCTTTGAGACAGGCA 17059568
>seq199
Length=6397235
Score = 179 bits (198), Expect = 1e-42
Identities = 144/171 (84%), Gaps = 2/171 (1%)
Strand=Plus/Plus
Query 66 TGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCA 125
||| |||| ||||||||||||| |||||||||||||||||||||||| |||| |||||||
Sbjct 3943049 TGTTGGGAGTGGGTAATTTGCGTGCCTGCTGCCTTCCTTGGATGTGGAAGCCATTTCTCA 3943108
Query 126 GGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCA 185
||||||||||||||||| ||||||| |||||| || |||| | | ||||||||||| ||
Sbjct 3943109 GGCTCCCTCTCCGGAATTGAACCCTGATTCCCTGTCACCCATGGTCACCATGGTAGG-CA 3943167
Query 186 CTAT-CCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGC 235
| | |||||||| |||||| |||||||||| || |||| | ||| ||
Sbjct 3943168 CGGTGACTACCATCAAAAGTTAATAGGGCAGACGTTCAAATGGATCATAGC 3943218
>seq89
Length=11090170
Score = 159 bits (176), Expect = 1e-36
Identities = 146/182 (80%), Gaps = 2/182 (1%)
Strand=Plus/Plus
Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61
|| ||||||||||||| | || |||||||| |||||| ||||| | || |||| ||
Sbjct 6095008 ACACATTCCAATTACAGGGCCTCAAAAGAGTCCTGTACTGCTATTTTTCATCGCTACTTC 6095067
Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121
||| ||| ||| |||||||||||| | |||||||||||| |||||||| |||||| |||
Sbjct 6095068 CCCAGGTCAGGAGTGGGTAATTTGCTCACCTGCTGCCTTCTTTGGATGTAGTAGCCATTT 6095127
Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181
|||||||| ||||||| |||| ||| ||| ||||||| | || | | | ||||| ||||
Sbjct 6095128 CTCAGGCT-CCTCTCCAGAATTGAATCCTGATTCCCCATCACTCATGGTCACCATAGTAG 6095186
Query 182 GC 183
||
Sbjct 6095187 GC 6095188
>seq11
Length=25647438
Score = 109 bits (120), Expect = 2e-21
Identities = 92/110 (84%), Gaps = 5/110 (5%)
Strand=Plus/Plus
Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454
|||| ||| |||||| |||| ||||||||||| |||||||| |||| |||| |||
Sbjct 23537405 CAAAGGAACCATAACTAATTTTATGAGCCATTCACAGTTTCATTGTACC--TTGC--ATA 23537460
Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
|||||| |||||||||| |||||||||||||||||||||| || || |||
Sbjct 23537461 CTTAGATATGCATGGCTCAATCTTTGAGACAAGCATATGA-TATTGACAG 23537509
>seq125
Length=9162479
Score = 105 bits (116), Expect = 2e-20
Identities = 84/100 (84%), Gaps = 1/100 (1%)
Strand=Plus/Minus
Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATG 464
|| |||||||||||||| ||||| ||||||||||||| | || | | ||||||||||
Sbjct 8983986 ATCACTGATTTAATGAGTCATTCTCAGTTTCACTGTACTGGCTGTGTGTGCTTAGACATG 8983927
Query 465 CATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
|| |||||| |||||||| |||||| ||| ||||||||||
Sbjct 8983926 CACGGCTTAGTCTTTGAGGCAAGCACATG-CTACTGGCAG 8983888
>seq659
Length=1232031
Score = 100 bits (110), Expect = 9e-19
Identities = 63/68 (93%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 116 CCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCA 175
||||||||||||||||||||||||||||||||||| ||||||||| |||||| | ||||
Sbjct 825078 CCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCA 825137
Query 176 TGGTAGGC 183
||||||||
Sbjct 825138 TGGTAGGC 825145
>seq28
Length=19650309
Score = 100 bits (110), Expect = 9e-19
Identities = 85/101 (84%), Gaps = 8/101 (8%)
Strand=Plus/Plus
Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGAT-TGCTTATACTTAGACAT 463
|||| ||||||||| |||||||| ||||||||| || ||| ||||||||||||
Sbjct 15160672 ATAAGTGATTTAATAAGCCATTCACAGTTTCACC----AGCCGTGC--ATACTTAGACAT 15160725
Query 464 GCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
|||||||||| ||||| ||||||||||||| ||||||||||
Sbjct 15160726 GCATGGCTTACTCTTTCAGACAAGCATATG-CTACTGGCAG 15160765
>seq1139
Length=271444
Score = 89.7 bits (98), Expect = 2e-15
Identities = 74/87 (85%), Gaps = 4/87 (5%)
Strand=Plus/Plus
Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA-TAGAT-TGCTTA 452
|||| |||| ||||||||| ||||||||||||||||||||||||||| ||| | |||
Sbjct 207982 CAAAAAAACCATAACTGATGTAATGAGCCATTCGCAGTTTCACTGTACTAGCTGTGC--G 208039
Query 453 TACTTAGACATGCATGGCTTAATCTTT 479
|||||||||| | ||||| |||||||
Sbjct 208040 TACTTAGACAAGTGTGGCTCAATCTTT 208066
>seq569
Length=1642107
Score = 82.4 bits (90), Expect = 2e-13
Identities = 102/136 (75%), Gaps = 3/136 (2%)
Strand=Plus/Plus
Query 72 GATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCC 131
|| ||| |||||||| || ||||||||||| || ||||||| ||| ||||| ||| ||
Sbjct 1267807 GAATGGATAATTTGCATGC-TGCTGCCTTCCCTGAATGTGGTTGCCATTTCTTAGGTCCC 1267865
Query 132 CTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATC- 190
|| ||| |||| |||| || ||||| || |||| | ||| | ||||| || ||
Sbjct 1267866 CTTTCCAGAATTGAACTCTGATTCCTTGTCACCCAGGGTCACCGTTGTAGG-CATAGTCA 1267924
Query 191 CTACCATCGAAAGTTG 206
|||||||| ||| |||
Sbjct 1267925 CTACCATCAAAAATTG 1267940
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510060024064
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |