Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1130 194 5e-47 seq36 194 5e-47 seq199 179 1e-42 seq89 159 1e-36 seq11 109 2e-21 seq125 105 2e-20 seq659 100 9e-19 seq28 100 9e-19 seq1139 89.7 2e-15 seq569 82.4 2e-13 >seq1130 Length=266821 Score = 194 bits (214), Expect = 5e-47 Identities = 175/218 (80%), Gaps = 9/218 (4%) Strand=Plus/Minus Query 4 CTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCC 62 ||||||||||||||| | || | |||||| ||||||| ||||| | |||||||||||| Sbjct 72981 CTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTCC 72922 Query 63 CCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 122 ||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 72921 CCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCTGTTTT 72862 Query 123 TCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGG 182 |||| || |||||| | ||| ||||||| ||| ||| | || || | ||||||| | | Sbjct 72861 TCAGCCTTCCTCTCTGTAATTGAACCCTCATTTCCCATCACTTGTGGTCACCATGGAATG 72802 Query 183 CCACTAT----CCTACCATCGAAAGTTGATAGGGCAGA 216 ||| || |||| |||||||||||||||| Sbjct 72801 ----TATGGTGATTAGCATCAGAAGTTGATAGGGCAGA 72768 >seq36 Length=17889389 Score = 194 bits (214), Expect = 5e-47 Identities = 173/214 (81%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || |||||||||| ||| ||||| |||||||||| Sbjct 17059063 ACTCATTCCAATTACAGGGCCTTGAAAGAGCCCTATATTGTTATTTTGCTTCACTACCTC 17059122 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 | || || |||| ||||||||||| ||||||||||||| | |||||||| ||||| ||| Sbjct 17059123 CTCG-GTGGGGAGTGGGTAATTTGTGCGCCTGCTGCCTGCTTTGGATGTAGTAGCTATTT 17059181 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 || ||||||||||| ||||||||||||| | | ||| |||||||| | |||||||||| Sbjct 17059182 CTTGGGCTCCCTCTCTGGAATCGAACCCTGACTGCCCATTACCCGTGGTCACCATGGTAG 17059241 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAG 215 || |||||||| |||||||||||||||| Sbjct 17059242 GCATGGTAACTACCATCTAAAGTTGATAGGGCAG 17059275 Score = 127 bits (140), Expect = 6e-27 Identities = 123/154 (80%), Gaps = 8/154 (5%) Strand=Plus/Plus Query 341 TTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA-AGG----TACTATC 395 || |||||||||||||||||||||||||| |||||||| || | | ||| || | | Sbjct 17059418 TTGGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTGGGAGAGGAGCAAACAACC 17059477 Query 396 AAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATAC 455 ||| ||| | |||||||||||||||||||| ||||||||||||| | || | | | Sbjct 17059478 AAAGGAACCAAAACTGATTTAATGAGCCATT--CAGTTTCACTGTA-CCACTGTTCCTGC 17059534 Query 456 TTAGACATGCATGGCTTAATCTTTGAGACAAGCA 489 ||||||| | ||||||| |||||||||||| ||| Sbjct 17059535 TTAGACAAGGATGGCTTGATCTTTGAGACAGGCA 17059568 >seq199 Length=6397235 Score = 179 bits (198), Expect = 1e-42 Identities = 144/171 (84%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 66 TGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCA 125 ||| |||| ||||||||||||| |||||||||||||||||||||||| |||| ||||||| Sbjct 3943049 TGTTGGGAGTGGGTAATTTGCGTGCCTGCTGCCTTCCTTGGATGTGGAAGCCATTTCTCA 3943108 Query 126 GGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCA 185 ||||||||||||||||| ||||||| |||||| || |||| | | ||||||||||| || Sbjct 3943109 GGCTCCCTCTCCGGAATTGAACCCTGATTCCCTGTCACCCATGGTCACCATGGTAGG-CA 3943167 Query 186 CTAT-CCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGC 235 | | |||||||| |||||| |||||||||| || |||| | ||| || Sbjct 3943168 CGGTGACTACCATCAAAAGTTAATAGGGCAGACGTTCAAATGGATCATAGC 3943218 >seq89 Length=11090170 Score = 159 bits (176), Expect = 1e-36 Identities = 146/182 (80%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 || ||||||||||||| | || |||||||| |||||| ||||| | || |||| || Sbjct 6095008 ACACATTCCAATTACAGGGCCTCAAAAGAGTCCTGTACTGCTATTTTTCATCGCTACTTC 6095067 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 ||| ||| ||| |||||||||||| | |||||||||||| |||||||| |||||| ||| Sbjct 6095068 CCCAGGTCAGGAGTGGGTAATTTGCTCACCTGCTGCCTTCTTTGGATGTAGTAGCCATTT 6095127 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 |||||||| ||||||| |||| ||| ||| ||||||| | || | | | ||||| |||| Sbjct 6095128 CTCAGGCT-CCTCTCCAGAATTGAATCCTGATTCCCCATCACTCATGGTCACCATAGTAG 6095186 Query 182 GC 183 || Sbjct 6095187 GC 6095188 >seq11 Length=25647438 Score = 109 bits (120), Expect = 2e-21 Identities = 92/110 (84%), Gaps = 5/110 (5%) Strand=Plus/Plus Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454 |||| ||| |||||| |||| ||||||||||| |||||||| |||| |||| ||| Sbjct 23537405 CAAAGGAACCATAACTAATTTTATGAGCCATTCACAGTTTCATTGTACC--TTGC--ATA 23537460 Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||| |||||||||| |||||||||||||||||||||| || || ||| Sbjct 23537461 CTTAGATATGCATGGCTCAATCTTTGAGACAAGCATATGA-TATTGACAG 23537509 >seq125 Length=9162479 Score = 105 bits (116), Expect = 2e-20 Identities = 84/100 (84%), Gaps = 1/100 (1%) Strand=Plus/Minus Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATG 464 || |||||||||||||| ||||| ||||||||||||| | || | | |||||||||| Sbjct 8983986 ATCACTGATTTAATGAGTCATTCTCAGTTTCACTGTACTGGCTGTGTGTGCTTAGACATG 8983927 Query 465 CATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 || |||||| |||||||| |||||| ||| |||||||||| Sbjct 8983926 CACGGCTTAGTCTTTGAGGCAAGCACATG-CTACTGGCAG 8983888 >seq659 Length=1232031 Score = 100 bits (110), Expect = 9e-19 Identities = 63/68 (93%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 116 CCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCA 175 ||||||||||||||||||||||||||||||||||| ||||||||| |||||| | |||| Sbjct 825078 CCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCA 825137 Query 176 TGGTAGGC 183 |||||||| Sbjct 825138 TGGTAGGC 825145 >seq28 Length=19650309 Score = 100 bits (110), Expect = 9e-19 Identities = 85/101 (84%), Gaps = 8/101 (8%) Strand=Plus/Plus Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGAT-TGCTTATACTTAGACAT 463 |||| ||||||||| |||||||| ||||||||| || ||| |||||||||||| Sbjct 15160672 ATAAGTGATTTAATAAGCCATTCACAGTTTCACC----AGCCGTGC--ATACTTAGACAT 15160725 Query 464 GCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||| ||||| ||||||||||||| |||||||||| Sbjct 15160726 GCATGGCTTACTCTTTCAGACAAGCATATG-CTACTGGCAG 15160765 >seq1139 Length=271444 Score = 89.7 bits (98), Expect = 2e-15 Identities = 74/87 (85%), Gaps = 4/87 (5%) Strand=Plus/Plus Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA-TAGAT-TGCTTA 452 |||| |||| ||||||||| ||||||||||||||||||||||||||| ||| | ||| Sbjct 207982 CAAAAAAACCATAACTGATGTAATGAGCCATTCGCAGTTTCACTGTACTAGCTGTGC--G 208039 Query 453 TACTTAGACATGCATGGCTTAATCTTT 479 |||||||||| | ||||| ||||||| Sbjct 208040 TACTTAGACAAGTGTGGCTCAATCTTT 208066 >seq569 Length=1642107 Score = 82.4 bits (90), Expect = 2e-13 Identities = 102/136 (75%), Gaps = 3/136 (2%) Strand=Plus/Plus Query 72 GATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCC 131 || ||| |||||||| || ||||||||||| || ||||||| ||| ||||| ||| || Sbjct 1267807 GAATGGATAATTTGCATGC-TGCTGCCTTCCCTGAATGTGGTTGCCATTTCTTAGGTCCC 1267865 Query 132 CTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATC- 190 || ||| |||| |||| || ||||| || |||| | ||| | ||||| || || Sbjct 1267866 CTTTCCAGAATTGAACTCTGATTCCTTGTCACCCAGGGTCACCGTTGTAGG-CATAGTCA 1267924 Query 191 CTACCATCGAAAGTTG 206 |||||||| ||| ||| Sbjct 1267925 CTACCATCAAAAATTG 1267940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510060024064