Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq41690 244 2e-62 seq41696 230 4e-58 seq512 111 3e-22 seq2547 105 1e-20 seq1691 98.7 2e-18 >seq41690 Length=2769 Score = 244 bits (270), Expect = 2e-62 Identities = 208/251 (83%), Gaps = 9/251 (4%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 2051 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 1993 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130 ||| || | |||||| | |||| | |||||||||||||| | | || ||| | Sbjct 1992 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCT 1934 Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | | | | ||| |||||| | | ||||||||||||||||||||||||||||| Sbjct 1933 CGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGAC 1874 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 1873 AAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCT 1814 Query 248 ATCAATCTGTC 258 ||||||||||| Sbjct 1813 ATCAATCTGTC 1803 >seq41696 Length=2962 Score = 230 bits (254), Expect = 4e-58 Identities = 205/251 (82%), Gaps = 12/251 (5%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 2131 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 2073 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130 ||| || | |||||| | |||| | |||||||||||||| | | || ||| | Sbjct 2072 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCT 2014 Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | | | | ||| |||||| | | ||||||||||||||||||||||||||||| Sbjct 2013 CGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGAC 1954 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||||| ||||| |||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 1953 AAATCGCTCCA---ACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCT 1897 Query 248 ATCAATCTGTC 258 ||||||||||| Sbjct 1896 ATCAATCTGTC 1886 >seq512 Length=1479324 Score = 111 bits (122), Expect = 3e-22 Identities = 78/89 (88%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 170 TATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCA 229 |||| || |||||||||||||| || ||||||||||||| ||||||||||||| | ||| Sbjct 752328 TATCAGACTTAACCAGACAAATAGCTTCACCAACTAAGAATGGCCATGCACCACTATCCA 752269 Query 230 TAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||| ||| |||||||||||| Sbjct 752268 CAGAATCAAGAAGGAGGTATCAATCTGTC 752240 >seq2547 Length=671549 Score = 105 bits (116), Expect = 1e-20 Identities = 78/91 (86%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 164 GTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCAC 223 |||| |||| |||||||| || ||||||| ||||||||||||||||| |||||||| ||| Sbjct 267319 GTTCATTATTGGAATTAATCAAACAAATCCCTCCACCAACTAAGAACAGCCATGCATCAC 267378 Query 224 CACCCATAGAATCAAGAAAGAGCTATCAATC 254 ||||| |||| ||||| ||||||||||| Sbjct 267379 AACCCAAGAAATCCAGAAACAGCTATCAATC 267409 >seq1691 Length=1117404 Score = 98.7 bits (108), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 17/231 (7%) Strand=Plus/Plus Query 36 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAG 95 |||||| |||||||| ||||||||||| ||||||||| |||| || ||| || Sbjct 1069328 CCCAGA-CATCTAAGAGCATCACAGACATGTTATTGC-TCAATCTC----TGGT--GACA 1069379 Query 96 CCAATAGTCCCTCTAAGAAGCCA---GCCACCAACC-----ATAGTCGATGGGGCTATTT 147 | | | || ||||||||||| | ||| || | ||||| | ||| || Sbjct 1069380 CTACTTGTGCCTCTAAGAAGTTGAGGGACACAGACTGCTCAAGGGTCGA-GTAACTAGTT 1069438 Query 148 AGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAG 207 |||| | | ||||| | ||| | ||||| | ||| ||||||||| || |||||| Sbjct 1069439 AGCATGGCAGAGTCTCACTGGTTGTTCAAATTACCTAGATAAATCACTCTACTGACTAAG 1069498 Query 208 AACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 || |||| ||| | |||||||||| ||||| |||||||||||| |||||| Sbjct 1069499 AATGGCCGTGCCCTACCACCCATATAATCAGAAAAGAGCTATCACTCTGTC 1069549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796292908014