Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq41696 82.4 9e-14 seq41690 82.4 9e-14 >seq41696 Length=2962 Score = 82.4 bits (90), Expect = 9e-14 Identities = 80/101 (79%), Gaps = 4/101 (4%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| ||| ||||||||| |||||||| ||| |||| | |||| Sbjct 1494 AAACCAACAAAATAGAACCGCG-GTCCTATTCCATTATTCCTAGCTGCGGTATCCAGGCG 1436 Query 70 TAA---GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 |||||||||||||||||||||||| |||| ||||| Sbjct 1435 GCTCGGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA 1395 >seq41690 Length=2769 Score = 82.4 bits (90), Expect = 9e-14 Identities = 80/101 (79%), Gaps = 4/101 (4%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| ||| ||||||||| |||||||| ||| |||| | |||| Sbjct 1411 AAACCAACAAAATAGAACCGCG-GTCCTATTCCATTATTCCTAGCTGCGGTATCCAGGCG 1353 Query 70 TAA---GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 |||||||||||||||||||||||| |||| ||||| Sbjct 1352 GCTCGGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA 1312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594821208396