Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq41696 96.9 4e-18 seq41690 96.9 4e-18 seq182 78.8 1e-12 >seq41696 Length=2962 Score = 96.9 bits (106), Expect = 4e-18 Identities = 129/176 (73%), Gaps = 5/176 (3%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC---TTTGCTCGAATACATTACCAT 69 ||||||||||||||||||||| |||||||||||||| || | |||| | | Sbjct 1395 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTA 1454 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 |||||||| ||||||||| ||||||||||||||| ||||| | ||| | | |||| Sbjct 1455 GGAATAATGGAATAGGAC-CGCGGTTCTATTTTGTTGGTTT-TCGGAACTGAGGCCATGA 1512 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 | || | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 1513 TTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGA 1568 >seq41690 Length=2769 Score = 96.9 bits (106), Expect = 4e-18 Identities = 129/176 (73%), Gaps = 5/176 (3%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC---TTTGCTCGAATACATTACCAT 69 ||||||||||||||||||||| |||||||||||||| || | |||| | | Sbjct 1312 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTA 1371 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 |||||||| ||||||||| ||||||||||||||| ||||| | ||| | | |||| Sbjct 1372 GGAATAATGGAATAGGAC-CGCGGTTCTATTTTGTTGGTTT-TCGGAACTGAGGCCATGA 1429 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 | || | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 1430 TTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGA 1485 >seq182 Length=2059790 Score = 78.8 bits (86), Expect = 1e-12 Identities = 79/101 (78%), Gaps = 4/101 (4%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC---TTTGCTCGAATACATTACCAT 69 |||| || |||||||||| ||||||||||||||||| ||| || |||| | | Sbjct 1117634 TTTAGTTGGAAAAAATTACAGCGTTCAAAGCAGGCCCGGGCTGCCCGGATACCGCAGCCG 1117693 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTT 110 |||||||| |||||| || | ||||||||||||| ||||| Sbjct 1117694 GGAATAATGGAATAGAAC-CGTGGTTCTATTTTGTTGGTTT 1117733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511674157760