Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq41696 197 3e-48 seq41690 197 3e-48 seq3379 118 2e-24 seq2576 102 2e-19 seq939 78.8 2e-12 >seq41696 Length=2962 Score = 197 bits (218), Expect = 3e-48 Identities = 201/258 (78%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 2033 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 2090 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || || || | | Sbjct 2091 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 2150 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||| |||||| | | || | | ||||| ||||||| | | |||| Sbjct 2151 CCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 2210 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| ||||| ||| ||||||||| Sbjct 2211 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATT 2270 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 2271 AAGTCCCTGCCCTTTGTA 2288 >seq41690 Length=2769 Score = 197 bits (218), Expect = 3e-48 Identities = 201/258 (78%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 1953 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 2010 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || || || | | Sbjct 2011 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 2070 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||| |||||| | | || | | ||||| ||||||| | | |||| Sbjct 2071 CCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 2130 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| ||||| ||| ||||||||| Sbjct 2131 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATT 2190 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 2191 AAGTCCCTGCCCTTTGTA 2208 >seq3379 Length=335884 Score = 118 bits (130), Expect = 2e-24 Identities = 162/224 (72%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 105 AAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTA 164 ||| ||||| || ||||||| ||||||||||||||||||| | || | |||| | |||| Sbjct 217435 AAGATTGAG-CAGTAACAGGCCTGTGATGCCCTTAGATGTCCAGGTCTGCACATGTGCTA 217377 Query 165 CACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAAC 224 ||||||| | || | || | | ||| ||| | ||| | ||||| || | || | Sbjct 217376 CACTGACTGGCTCAGTGTGTGCCTACCCTAAGCCAGCTGGTGTAGGTAACCTGTTGAACC 217317 Query 225 TCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAA 284 | | ||| ||||||| | | ||||||||| | | ||| || ||||||| || ||||| Sbjct 217316 CCATTTGTGATGGGGATCGGGGATTGCAATTGCT-CCCTTGAATGAGGAATTCCCAGTAA 217258 Query 285 GCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | | | || | | | || ||||||| ||| |||||||||||| Sbjct 217257 GTGTGGGTTGTAATCTGGCATTGATTAAGTCTCTGCCCTTTGTA 217214 >seq2576 Length=701839 Score = 102 bits (112), Expect = 2e-19 Identities = 162/226 (72%), Gaps = 5/226 (2%) Strand=Plus/Minus Query 105 AAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTA 164 ||| ||||| ||||| || |||||||||||| |||| ||| | | || ||| | || Sbjct 23171 AAGATTGAG-CAATATCATGTCTGTGATGCCATTAGGTGTCCAGAGCTGCATACAGAGTA 23113 Query 165 CACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAAC 224 ||||||| | || | | | | ||| | ||||||| | |||| || ||| || Sbjct 23112 CACTGACTGGCTCAGCATGCACCTACCCTACACTGGAAGGTACGTGTAACCT-GTTGGAC 23054 Query 225 TCTGTC-GTGCTGGGGATA-GAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGT 282 | | ||| | |||||| ||| |||||||||||| ||| | ||| |||||| || ||| Sbjct 23053 ACCATTTGTGATAGGGATAAGAG-ATTGCAATTATTCCTCATGAACAAGGAATTCCCAGT 22995 Query 283 AAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||| | | ||||| | | | |||||||| |||||||||| ||||| Sbjct 22994 AAGTGTGGGTCATAAACTTGTGTTGATTAAGTCCCTGCCCCTTGTA 22949 >seq939 Length=875588 Score = 78.8 bits (86), Expect = 2e-12 Identities = 90/120 (75%), Gaps = 1/120 (1%) Strand=Plus/Minus Query 209 GGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAAC 268 ||||| || ||| ||| || || | ||||||| | | ||||| | | || | | || Sbjct 331990 GGTAACCT-GTTGAACCCTTTCATTATGGGGATCGGGGATTGCGACTGTTATCCATGAAT 331932 Query 269 GAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||| | || |||||| ||| ||||| ||| ||||||||| |||||||||||||||| Sbjct 331931 GAGGAGTTCCCAGTAAGTGCGGGTCATAAGCTTACGTTGATTAAGTCCCTGCCCTTTGTA 331872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946577746432