Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq41696 383 5e-104 seq41690 383 5e-104 seq109 174 5e-41 seq182 138 3e-30 seq11460 98.7 3e-18 seq1911 96.9 1e-17 seq858 89.7 2e-15 seq5646 87.8 5e-15 seq1159 75.2 3e-11 seq560 75.2 3e-11 >seq41696 Length=2962 Score = 383 bits (424), Expect = 5e-104 Identities = 419/555 (75%), Gaps = 55/555 (10%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||||| Sbjct 1162 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 1103 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1102 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 1043 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||||||||||||||||| ||||||||| |||||| | |||||||||| Sbjct 1042 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAG 983 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 || |||||||||||||||||||||||||| || ||||| | |||||| | | Sbjct 982 GCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCCAC 923 Query 242 -AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA-------GGAGCC------ 285 || | |||||| | | ||||| || ||||||| || ||| Sbjct 922 GGGGGGCGTGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGCCGCCGGCGCCCGCCCC 863 Query 286 ----------CCGAAGG----------GCGTTGGTTTTTTATCTAATAAATACAC----C 321 ||| ||| | ||||| |||| |||| |||||| ||| | Sbjct 862 CCGGCCGGGGCCGGAGGGGAGCTCACCGGGTTGG-TTTTGATCTGATAAATGCACGCATC 804 Query 322 CCTTCCGAAGTCGGGGT-------TTTTAGCATGTATTAGCTCTAGAATTACCACGGTTA 374 || ||| ||||| | |||||||||||||||||||||||||| |||| Sbjct 803 CCCCCCGCGAGGGGGGTCAGCGCCCGTCGGCATGTATTAGCTCTAGAATTACCACAGTTA 744 Query 375 TCCATGTAGTA-AG----GTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGC 429 |||| |||| | || | | | |||| ||| ||||||||||||||||||||||||| Sbjct 743 TCCAAGTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGAGCCATTCGC 684 Query 430 AGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCA 489 |||||||||||| | | ||||||||||||||||||||||||||||||||||||| Sbjct 683 AGTTTCACTGTACCGGCCGTGCGTACTTAGACATGCATGGCTTAATCTTTGAGACAAGCA 624 Query 490 TATGACTACTGGCAG 504 |||| |||||||||| Sbjct 623 TATG-CTACTGGCAG 610 >seq41690 Length=2769 Score = 383 bits (424), Expect = 5e-104 Identities = 419/555 (75%), Gaps = 55/555 (10%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||||| Sbjct 1079 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 1020 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1019 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 960 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||||||||||||||||| ||||||||| |||||| | |||||||||| Sbjct 959 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAG 900 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 || |||||||||||||||||||||||||| || ||||| | |||||| | | Sbjct 899 GCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCCAC 840 Query 242 -AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA-------GGAGCC------ 285 || | |||||| | | ||||| || ||||||| || ||| Sbjct 839 GGGGGGCGTGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGCCGCCGGCGCCCGCCCC 780 Query 286 ----------CCGAAGG----------GCGTTGGTTTTTTATCTAATAAATACAC----C 321 ||| ||| | ||||| |||| |||| |||||| ||| | Sbjct 779 CCGGCCGGGGCCGGAGGGGAGCTCACCGGGTTGG-TTTTGATCTGATAAATGCACGCATC 721 Query 322 CCTTCCGAAGTCGGGGT-------TTTTAGCATGTATTAGCTCTAGAATTACCACGGTTA 374 || ||| ||||| | |||||||||||||||||||||||||| |||| Sbjct 720 CCCCCCGCGAGGGGGGTCAGCGCCCGTCGGCATGTATTAGCTCTAGAATTACCACAGTTA 661 Query 375 TCCATGTAGTA-AG----GTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGC 429 |||| |||| | || | | | |||| ||| ||||||||||||||||||||||||| Sbjct 660 TCCAAGTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGAGCCATTCGC 601 Query 430 AGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCA 489 |||||||||||| | | ||||||||||||||||||||||||||||||||||||| Sbjct 600 AGTTTCACTGTACCGGCCGTGCGTACTTAGACATGCATGGCTTAATCTTTGAGACAAGCA 541 Query 490 TATGACTACTGGCAG 504 |||| |||||||||| Sbjct 540 TATG-CTACTGGCAG 527 >seq109 Length=2086113 Score = 174 bits (192), Expect = 5e-41 Identities = 139/166 (84%), Gaps = 6/166 (4%) Strand=Plus/Plus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTA-----CTATCAAA 398 |||||||||||||||||||||||||| |||||||| |||| | | | | | |||| Sbjct 710247 GCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAGAGGAGCGAGCGACCAAA 710306 Query 399 TAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTA 458 ||| ||||||||||||||||||||||||||||||||||||| | | |||||| Sbjct 710307 GGAACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGCGTACTTA 710366 Query 459 GACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||| |||||||||||| |||||||||| Sbjct 710367 GACATGCATGGCTTAATCTTTGGGACAAGCATATG-CTACTGGCAG 710411 >seq182 Length=2059790 Score = 138 bits (152), Expect = 3e-30 Identities = 126/160 (79%), Gaps = 7/160 (4%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCC 62 ||||| |||||||||| | | | ||||| |||| || ||||| |||||||| | ||| Sbjct 1117403 ACTCAGTCCAATTACAGGGCTCGAAAGAATCCTGCATTGTTATTTTTTGTCACTCCTTCC 1117344 Query 63 CCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 122 || || |||| ||||||||||| | |||| |||||||||||| ||||| |||| Sbjct 1117343 CCAGGTGGGGAGTGGGTAATTTGTGGGCCT-------TCCTTGGATGTGATAGCCATTTC 1117291 Query 123 TCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 ||||||| ||||||||||| ||||||| ||||||| ||| Sbjct 1117290 TCAGGCTGTCTCTCCGGAATTGAACCCTGATTCCCCATTA 1117251 >seq11460 Length=36348 Score = 98.7 bits (108), Expect = 3e-18 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 108 TGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGT 167 || || ||| |||||||||||||||||||| |||| ||||||| |||| | || |||||| Sbjct 14162 TGGGGCAGCTGTTTCTCAGGCTCCCTCTCCAGAATGGAACCCTGATTCTCTGTCACCCGT 14103 Query 168 TGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGA 216 | ||| |||||||| |||||||||||||||||| |||||| Sbjct 14102 AGTCACCGTGGTAGGCAGGGCAACTACCATCGAAAGTTGATGTGGCAGA 14054 >seq1911 Length=1022604 Score = 96.9 bits (106), Expect = 1e-17 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 24 CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATT 83 || ||| |||||||| ||||| | ||||||||||| | || |||| ||| || || Sbjct 570565 CAGAAGCACCCTGTATTGTTATTTTTCGTCACTACCTCTGTGCGTTGGGAGTGGATAGTT 570624 Query 84 TGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTC 136 | | ||||| |||||||||||||||| ||||| ||||||||| |||||||| Sbjct 570625 GGTGTGCCTGTTGCCTTCCTTGGATGTAGTAGCGATTTCTCAGGTTCCCTCTC 570677 Score = 93.3 bits (102), Expect = 1e-16 Identities = 82/99 (83%), Gaps = 4/99 (4%) Strand=Plus/Plus Query 407 AACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGAT-TGCTTATACTTAGACATGC 465 |||||||||||||||||| | ||||||||| || || | ||||| ||||||||||| Sbjct 570734 AACTGATTTAATGAGCCACTTGCAGTTTCATTGACCAGCTGTGCTTT--CTTAGACATGC 570791 Query 466 ATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||| ||||||| |||| | ||| |||||| Sbjct 570792 ATGGCTTAATCTGTGAGACAGACATA-GGCTATTGGCAG 570829 >seq858 Length=1000549 Score = 89.7 bits (98), Expect = 2e-15 Identities = 157/223 (70%), Gaps = 8/223 (4%) Strand=Plus/Plus Query 7 ATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCG 65 |||||| |||| | | | |||||| ||||||| |||| | | | | | ||| || Sbjct 423262 ATTCCAGTTACTGGGTCTACAAAGAGACCTGTATTGGTATATTCTTTAAATTCCTTACCA 423321 Query 66 TGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGG-TAGCCGTTTCTC 124 ||| | | ||| ||| ||| | ||| ||| ||| ||||| || ||| | ||| |||||| Sbjct 423322 GGTCAGAAGTGGATAACTTGTGTGCCAGCTACCTACCTTGCATATGGGTGGCCATTTCTC 423381 Query 125 AGGCTCCCTCTCCGGAA-TCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGC 183 ||| ||| | ||| ||| || ||| |||||| | | |||| |||||||| | | Sbjct 423382 AGGTTCCGTGTCCAGAAATCATGCCCAGATTCCC----ATCTGTTGTCACCATGGTGGAC 423437 Query 184 CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATG 226 ||| |||| ||||||||||||||||| ||||||||| Sbjct 423438 GTGGCAACTATCATC-AAAGTTGATAGGGCAGACATTTGAATG 423479 >seq5646 Length=45690 Score = 87.8 bits (96), Expect = 5e-15 Identities = 84/105 (80%), Gaps = 2/105 (2%) Strand=Plus/Minus Query 113 TAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATA 172 |||| ||||||||||||||||||| | |||| || || ||| ||| |||||| | | | Sbjct 11214 TAGCTGTTTCTCAGGCTCCCTCTCTGCAATCAAATTCTGATTTCCCATTACCCCTGGTCA 11155 Query 173 CCATGGTAGGC-CACTATCCTACCATCGAAAGTTGATAGGGCAGA 216 ||||||||||| || | || |||| ||||||||||||||||| Sbjct 11154 CCATGGTAGGCACAGT-GACTGTCATCAAAAGTTGATAGGGCAGA 11111 >seq1159 Length=585447 Score = 75.2 bits (82), Expect = 3e-11 Identities = 66/81 (81%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 76 GGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCT 135 |||||||| || | | ||||||||||||||||||| || || |||||| ||||| |||| Sbjct 362606 GGGTAATTGGCACACTTGCTGCCTTCCTTGGATGTTGTGGCTGTTTCTTAGGCT-CCTCC 362548 Query 136 CCGGAATCGAACCCTAATTCC 156 | ||| ||||||| ||||| Sbjct 362547 CTGGAGGTGAACCCTGATTCC 362527 >seq560 Length=1147142 Score = 75.2 bits (82), Expect = 3e-11 Identities = 96/129 (74%), Gaps = 4/129 (3%) Strand=Plus/Minus Query 75 TGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTC 134 ||||| |||||| || |||||||||||||| | | ||| ||| ||||||||| | ||| Sbjct 717985 TGGGTCATTTGCATGC-TGCTGCCTTCCTTGAAAGGGGTTGCCATTTCTCAGGACCACTC 717927 Query 135 TCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCA--CTATCCT 192 || |||| ||||||| |||| || |||| | ||||| ||| |||| || || Sbjct 717926 TCTGGAACTGAACCCTGATTCGTTGTCACCCAAAGTCACCATTGTA-GCCATGGTAGACT 717868 Query 193 ACCATCGAA 201 |||| |||| Sbjct 717867 ACCACCGAA 717859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509407757824