Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Procavia_20capensis_20[genbank_20GCA_5F000152225.2_202014-12-16] 65,694 sequences; 3,602,182,911 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq58 111 1e-19 seq51 100 2e-16 >seq58 Length=3827145 Score = 111 bits (122), Expect = 1e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| ||||| || ||||| |||||||| || ||||| || || |||| ||||| || Sbjct 3728832 GGTGTACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTTCCCAGGTTCTGCTG 3728773 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 |||||||| ||||| || | ||| ||||| | ||||||||| || || ||||| || Sbjct 3728772 GTTACTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTCCCTGTCTCTGTCTG 3728713 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 |||||||||||||| | |||||| Sbjct 3728712 AGACTCAATGATGGCATACCAAAG 3728689 >seq51 Length=3716683 Score = 100 bits (110), Expect = 2e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 ||||||| || |||||||| || || | || || || || ||||| ||||| || | Sbjct 832873 TGGAACGCTTTAGTCAGGAGGTACAGGTTCCAGAAGCTCGCTGCTTCTATGGCTTTCAAA 832932 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 || ||| |||||||| ||||| |||||||||||| | || || || ||||||||||||| Sbjct 832933 TTCTCATCGAGAATGTTCACTCAGAGATGTACAGTTTGCTAATAGACACGTACATCAGGG 832992 Query 61376 AGC 61378 ||| Sbjct 832993 AGC 832995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397249688920160