Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq15 158 2e-36 seq243 87.8 3e-15 seq5 80.6 5e-13 seq1 75.2 2e-11 >seq15 Length=28238629 Score = 158 bits (174), Expect = 2e-36 Identities = 182/242 (75%), Gaps = 5/242 (2%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC---GAATACATTAGCAT 130 |||||||||||||||||||||||||||||||||||| || | |||| ||| Sbjct 22153207 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTA 22153266 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 |||||||| ||||||||| || |||||||||||||||||| | || | | ||||| Sbjct 22153267 GGAATAATGGAATAGGACC-GCAGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT 22153325 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| ||||| | |||||| | ||||| | |||||||||||||||||| Sbjct 22153326 TAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGC 22153385 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| || | |||||||| || ||||| |||||||||||||||| |||||||| Sbjct 22153386 GCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAA 22153444 Query 311 GT 312 || Sbjct 22153445 GT 22153446 Score = 125 bits (138), Expect = 1e-26 Identities = 173/236 (73%), Gaps = 7/236 (3%) Strand=Plus/Plus Query 82 GAAAAAATTA-GAGTGTTCAAAGCAGGCCTTTGCT---CGAATACATTAGCATGGAATAA 137 |||||||| | |||||||||||||||||| ||| | ||| ||| ||||||| Sbjct 5321090 GAAAAAATAAAGAGTGTTCAAAGCAGGCCCAAGCTGCCCAGATATCGCAGCTGGGAATAA 5321149 Query 138 TAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGG 197 | |||||||| || ||||||||||||||||||| || || | | || ||||| ||| Sbjct 5321150 TGAAATAGGAC-TGTGGTTCTATTTTGTTGGTTTTCAGAACTGAGGCCATAATTAAGAGG 5321208 Query 198 GATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGAC 257 || || | || | | ||||| | |||||||||||||||| || | |||| Sbjct 5321209 GACAGCCAGGAGCATTTGTATTGCACCACCAGAGGTGAAATTCTT-GACCAGTACAAGAT 5321267 Query 258 TAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 ||| | | |||||| || ||||| |||||||||||||||| ||||||||||| Sbjct 5321268 GAACCAAAGGGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGTT 5321322 >seq243 Length=3072122 Score = 87.8 bits (96), Expect = 3e-15 Identities = 131/181 (72%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 133 AATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTA 192 |||||| |||| |||| || |||||||||||||||||| || || || |||| ||||| Sbjct 2426678 AATAAT-GAATGGGAC-TGACGTTCTATTTTGTTGGTTTTCAGAACTGCGGTAAAGATTA 2426735 Query 193 ATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTG 252 | || | | | | |||| | ||||| || |||||| ||||||||||| | Sbjct 2426736 AGAGAGGT-GGCTGGGGCATTCGTATTACGCTGCTAGAGGTAAAATTCTTGGACTGGCAC 2426794 Query 253 AAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 ||||| ||| | | ||||| || |||| ||||||||| ||||| ||| |||||| Sbjct 2426795 AAGACAAACCAGAGTGAAAGTATTTGTCAAGAGTGTTTTCATGAATCA-AGAATGAAAGT 2426853 Query 313 T 313 | Sbjct 2426854 T 2426854 >seq5 Length=36277496 Score = 80.6 bits (88), Expect = 5e-13 Identities = 163/236 (69%), Gaps = 7/236 (3%) Strand=Plus/Minus Query 84 AAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC---GAAT-ACATTAGCATGGAATAATA 139 ||||| ||||| |||||||||| ||| ||| | || ||| ||| |||||| Sbjct 21573401 AAAAACAAGAGTATTCAAAGCAGACCTGAGCTGCCTGTATGACAC-AGCTAGGAATATCG 21573343 Query 140 GAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGA 199 |||||||| | ||||| |||||||||||| || | | |||||| | || || Sbjct 21573342 AAATAGGACCC-CAGTTCTGTTTTGTTGGTTTTCAGAAGTTAGGCCATGATTCAGAGTGA 21573284 Query 200 TAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTA 259 | | ||| | | || | || ||||||||||||||||| | | ||||| Sbjct 21573283 TGACCAGGGACATTCATCTTGAGCTGCTGGAGGTGAAATTCTTGGACTGACACAAGACAG 21573224 Query 260 ACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAG 315 |||| |||||| || ||||| |||||||||||||||| |||| |||||||| Sbjct 21573223 ACTAGAATGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACAAAAGTTAG 21573169 >seq1 Length=45942467 Score = 75.2 bits (82), Expect = 2e-11 Identities = 165/243 (68%), Gaps = 6/243 (2%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAA--TTAGAGTGTTCAAAGCAGGCCTTTGCTC--GAATACATTAGCA 129 ||||||||||||||| ||||| ||| |||||| || || | |||| ||| Sbjct 28817712 TTTACTTTGAAAAAAAATTAGAACGTTTAAAGCATGCTCAAACTACTGGATACTGCAGCT 28817771 Query 130 TGGAATAATAGAATAGGA-CGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATG 188 | || |||||||||| | | || ||| |||||||||||| | | ||| | ||| Sbjct 28817772 AAAAGTATTAGAATAGGATCCTTTGGCTCTGTTTTGTTGGTTTTTGGAACCAAAGCCATG 28817831 Query 189 ATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 ||| | ||| || | ||| ||| |||||| || ||| ||||||||||| | Sbjct 28817832 ATTGAGAGGTATGACCTGGGATGTTAGTATTGTGCTGCTGGAGTTGAAATTCTTGAAACC 28817891 Query 249 ATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGA 308 || ||| || || || | ||| || | ||| ||||| |||||||||| ||| || Sbjct 28817892 ATACAAGGTGGACCACAGCAAGAGCATTTGCAAAGAATGTTCTCATTAATCA-AGAATGA 28817950 Query 309 AAG 311 ||| Sbjct 28817951 AAG 28817953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915142131904