Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq44 149 3e-33
seq23 131 7e-28
seq162 127 9e-27
seq13 109 2e-21
seq2 104 1e-19
seq188 96.9 1e-17
seq47 96.9 1e-17
seq182 91.5 6e-16
seq250 87.8 7e-15
seq69 86.0 3e-14
seq81 84.2 9e-14
seq80 82.4 3e-13
seq130 78.8 4e-12
>seq44
Length=18606259
Score = 149 bits (164), Expect = 3e-33
Identities = 105/120 (88%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623
|||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 14185615 TGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTG 14185556
Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
||||||| || |||||| ||| ||||||||||| ||||| | |||||||||||||||
Sbjct 14185555 GTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 14185496
>seq23
Length=24341844
Score = 131 bits (144), Expect = 7e-28
Identities = 101/120 (84%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623
|||| |||||||||||||||||| ||||||||| |||| |||||||||||||||||||
Sbjct 21093541 TGTTAGGACCCGAAAGATGGTGAGCTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTG 21093482
Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
||||||| | |||||| ||| ||||||||||| ||||| | ||||| ||||||||
Sbjct 21093481 GTGGAGGTCCATAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTGCAGGGGCGA 21093422
>seq162
Length=6331913
Score = 127 bits (140), Expect = 9e-27
Identities = 99/118 (84%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623
|||| |||||||||||||||||||||||||||| | |||| ||||||||||||||||||
Sbjct 6213488 TGTTAGGACCCGAAAGATGGTGAACTATGCCTGGACAGGGCAAAGCCAGAGGAAACTCTG 6213547
Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681
| ||||| | ||| || ||| |||||||| | ||||| || |||||||||||||
Sbjct 6213548 GAGGAGGTCTGTAGCAGTCCTGATGTGCAAATTGGTCGTCCAACCTGGGTATAGGGGC 6213605
>seq13
Length=31187783
Score = 109 bits (120), Expect = 2e-21
Identities = 104/133 (78%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608
||| | ||||| | |||| ||| ||||||||||||||||||||||| || | |||
Sbjct 12055480 GAGGATGAGCACAAGTGTTAGGAATCGAAAGATGGTGAACTATGCCTGGGCAGAGCAAAG 12055539
Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668
| |||||||||||||||||||| | |||||| ||| || ||||||| || ||| |
Sbjct 12055540 CTAGAGGAAACTCTGGTGGAGGTCCATAGCGGTCCTGATGTACAAATCGCTCATCAGACC 12055599
Query 669 TGGGTATAGGGGC 681
||||||||| |||
Sbjct 12055600 TGGGTATAGTGGC 12055612
>seq2
Length=45383871
Score = 104 bits (114), Expect = 1e-19
Identities = 95/120 (79%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623
|||| ||||||| ||||||| || ||| |||||| |||| ||||| ||||||| ||| |
Sbjct 2369075 TGTTAGGACCCGGAAGATGGGGAGCTACGCCTGAGCAGGGCGAAGCTAGAGGAACCTCCG 2369016
Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
||||||| | |||||| ||| |||||||| | | ||| | |||||||||||||||
Sbjct 2369015 GTGGAGGTCCATAGCGGTCCTGACGTGCAAACTGGTTGTCCTACCTGGGTATAGGGGCGA 2368956
>seq188
Length=5059284
Score = 96.9 bits (106), Expect = 1e-17
Identities = 91/115 (79%), Gaps = 2/115 (2%)
Strand=Plus/Minus
Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628
|||| |||||||||||||||||| ||| |||| ||||||||||||| ||||||||
Sbjct 1774828 GGACTTGAAAGATGGTGAACTATGTCTGGGCAGGGCAAAGCCAGAGGAAA--CTGGTGGA 1774771
Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
|| | ||| ||||||| |||||||| | || || || |||||||| ||| ||
Sbjct 1774770 GGTCCACAGTGGTTCTGATGTGCAAATTGGTCATCCAACCTGGGTATATGGGTGA 1774716
>seq47
Length=17992032
Score = 96.9 bits (106), Expect = 1e-17
Identities = 76/91 (84%), Gaps = 0/91 (0%)
Strand=Plus/Plus
Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623
|||| |||| | ||||||||||||| ||||||| |||| ||||||||||||||||||
Sbjct 437008 TGTTAGGACTCCAAAGATGGTGAACAATGCCTGGGCAGGGCAAAGCCAGAGGAAACTCTG 437067
Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAA 654
||||||| | |||||| ||| ||||||||
Sbjct 437068 GTGGAGGTCGGTAGCGGTCCTGACGTGCAAA 437098
>seq182
Length=5327329
Score = 91.5 bits (100), Expect = 6e-16
Identities = 89/115 (77%), Gaps = 5/115 (4%)
Strand=Plus/Minus
Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628
||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 720478 GGACCTAAAAGATGGTGAACTATGCCTGGGCAGGGTGAAGCCAGAGGAAACTCTGGTAGA 720419
Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
|| | || || | ||||||| | || || | |||||||||||| ||
Sbjct 720418 GGTCCATAGTAGT-----CCTGCAAATTGGTCATCTGACCTGGGTATAGGGGTGA 720369
>seq250
Length=2905382
Score = 87.8 bits (96), Expect = 7e-15
Identities = 77/96 (80%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 588 CTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGC 647
||||||||| ||||||||||||||||| ||||||||||||| || |||||| ||| |
Sbjct 1765819 CTATGCCTGGGAAGGGTGAAGCCAGAGGAGACTCTGGTGGAGGTCCGTAGCGGTCCTGAC 1765878
Query 648 GTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
|| ||||||| || | | ||| |||||||| ||
Sbjct 1765879 GTACAAATCGGTCATTCAGCCTGGATATAGGGGTGA 1765914
>seq69
Length=14226257
Score = 86.0 bits (94), Expect = 3e-14
Identities = 99/132 (75%), Gaps = 5/132 (4%)
Strand=Plus/Minus
Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608
||| | ||||| | ||| |||||| ||||||||| |||||| |||| |||| |||
Sbjct 8414429 GAGCATGAGCACACGTGTCAGGACCCAAAAGATGGTAAACTATCCCTGGGCAGGGCAAAG 8414370
Query 609 CCAGAGGAAACTCTGGTGGAGGCTC-GCAGCGGTTCTGGCGTGCAAATCGATCGTCAAAT 667
|||||||||||||| | | ||| | || ||| ||| ||||||||| | || || |
Sbjct 8414369 CCAGAGGAAACTCT----GTGTCTCTGTAGTGGTCCTGACGTGCAAATGGGTCATCTGAC 8414314
Query 668 TTGGGTATAGGG 679
|||||||||||
Sbjct 8414313 CTGGGTATAGGG 8414302
>seq81
Length=12574705
Score = 84.2 bits (92), Expect = 9e-14
Identities = 66/79 (84%), Gaps = 0/79 (0%)
Strand=Plus/Minus
Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625
|| ||||||||||| ||||||||| |||||| |||| |||||||||||||||||||||
Sbjct 8682367 TTAGGACCCGAAAGGTGGTGAACTGTGCCTGGCCAGGGCGAAGCCAGAGGAAACTCTGGT 8682308
Query 626 GGAGGCTCGCAGCGGTTCT 644
|||| || ||| || ||
Sbjct 8682307 AGAGGTCCGTAGCCGTCCT 8682289
>seq80
Length=12639005
Score = 82.4 bits (90), Expect = 3e-13
Identities = 104/143 (73%), Gaps = 5/143 (3%)
Strand=Plus/Plus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||| | |||| ||||||||||||| | || ||| |||||| | | ||||| |||||||
Sbjct 6640386 GAGTTGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 6640445
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159
| || ||||||||||| ||||||| | | ||||| ||| |||||| |
Sbjct 6640446 ACCAGCACGAGACCGATAGTCAACAAGTACCCTAAGGGAAAGTTGA-----ACTTTGAAG 6640500
Query 160 AGAGAGTTAAAAAGCACGTGAAA 182
|||||||| || || | |||||
Sbjct 6640501 AGAGAGTTCAAGAGGGCATGAAA 6640523
>seq130
Length=8343343
Score = 78.8 bits (86), Expect = 4e-12
Identities = 93/126 (74%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||||| || ||||||||||||| | || || ||||| | ||||| ||| |||
Sbjct 5097541 GAGTCGGACTGCTTGGGAATGCAGCCCAAAGCTGGTAGTAAACTCTATCTAAGGCTGAAT 5097482
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159
| || |||||||||||| ||||||| | | ||||| ||||||| |||||| ||
Sbjct 5097481 ACCAGCAAGAGACCGATAGTCAACAAGTACCATAAAGGAAAGTTGAAAAGAACTTTGAAA 5097422
Query 160 AGAGAG 165
||||||
Sbjct 5097421 AGAGAG 5097416
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079864371650
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |