Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq44 149 3e-33 seq23 131 7e-28 seq162 127 9e-27 seq13 109 2e-21 seq2 104 1e-19 seq188 96.9 1e-17 seq47 96.9 1e-17 seq182 91.5 6e-16 seq250 87.8 7e-15 seq69 86.0 3e-14 seq81 84.2 9e-14 seq80 82.4 3e-13 seq130 78.8 4e-12 >seq44 Length=18606259 Score = 149 bits (164), Expect = 3e-33 Identities = 105/120 (88%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 14185615 TGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTG 14185556 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 14185555 GTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 14185496 >seq23 Length=24341844 Score = 131 bits (144), Expect = 7e-28 Identities = 101/120 (84%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||||||||||||||| ||||||||| |||| ||||||||||||||||||| Sbjct 21093541 TGTTAGGACCCGAAAGATGGTGAGCTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTG 21093482 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| | |||||| ||| ||||||||||| ||||| | ||||| |||||||| Sbjct 21093481 GTGGAGGTCCATAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTGCAGGGGCGA 21093422 >seq162 Length=6331913 Score = 127 bits (140), Expect = 9e-27 Identities = 99/118 (84%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||||||||||||||||||||||||| | |||| |||||||||||||||||| Sbjct 6213488 TGTTAGGACCCGAAAGATGGTGAACTATGCCTGGACAGGGCAAAGCCAGAGGAAACTCTG 6213547 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 | ||||| | ||| || ||| |||||||| | ||||| || ||||||||||||| Sbjct 6213548 GAGGAGGTCTGTAGCAGTCCTGATGTGCAAATTGGTCGTCCAACCTGGGTATAGGGGC 6213605 >seq13 Length=31187783 Score = 109 bits (120), Expect = 2e-21 Identities = 104/133 (78%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | ||||| | |||| ||| ||||||||||||||||||||||| || | ||| Sbjct 12055480 GAGGATGAGCACAAGTGTTAGGAATCGAAAGATGGTGAACTATGCCTGGGCAGAGCAAAG 12055539 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 | |||||||||||||||||||| | |||||| ||| || ||||||| || ||| | Sbjct 12055540 CTAGAGGAAACTCTGGTGGAGGTCCATAGCGGTCCTGATGTACAAATCGCTCATCAGACC 12055599 Query 669 TGGGTATAGGGGC 681 ||||||||| ||| Sbjct 12055600 TGGGTATAGTGGC 12055612 >seq2 Length=45383871 Score = 104 bits (114), Expect = 1e-19 Identities = 95/120 (79%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| ||||||| ||||||| || ||| |||||| |||| ||||| ||||||| ||| | Sbjct 2369075 TGTTAGGACCCGGAAGATGGGGAGCTACGCCTGAGCAGGGCGAAGCTAGAGGAACCTCCG 2369016 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| | |||||| ||| |||||||| | | ||| | ||||||||||||||| Sbjct 2369015 GTGGAGGTCCATAGCGGTCCTGACGTGCAAACTGGTTGTCCTACCTGGGTATAGGGGCGA 2368956 >seq188 Length=5059284 Score = 96.9 bits (106), Expect = 1e-17 Identities = 91/115 (79%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||| |||||||||||||||||| ||| |||| ||||||||||||| |||||||| Sbjct 1774828 GGACTTGAAAGATGGTGAACTATGTCTGGGCAGGGCAAAGCCAGAGGAAA--CTGGTGGA 1774771 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || | ||| ||||||| |||||||| | || || || |||||||| ||| || Sbjct 1774770 GGTCCACAGTGGTTCTGATGTGCAAATTGGTCATCCAACCTGGGTATATGGGTGA 1774716 >seq47 Length=17992032 Score = 96.9 bits (106), Expect = 1e-17 Identities = 76/91 (84%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||| | ||||||||||||| ||||||| |||| |||||||||||||||||| Sbjct 437008 TGTTAGGACTCCAAAGATGGTGAACAATGCCTGGGCAGGGCAAAGCCAGAGGAAACTCTG 437067 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAA 654 ||||||| | |||||| ||| |||||||| Sbjct 437068 GTGGAGGTCGGTAGCGGTCCTGACGTGCAAA 437098 >seq182 Length=5327329 Score = 91.5 bits (100), Expect = 6e-16 Identities = 89/115 (77%), Gaps = 5/115 (4%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 ||||| ||||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct 720478 GGACCTAAAAGATGGTGAACTATGCCTGGGCAGGGTGAAGCCAGAGGAAACTCTGGTAGA 720419 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || | || || | ||||||| | || || | |||||||||||| || Sbjct 720418 GGTCCATAGTAGT-----CCTGCAAATTGGTCATCTGACCTGGGTATAGGGGTGA 720369 >seq250 Length=2905382 Score = 87.8 bits (96), Expect = 7e-15 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 588 CTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGC 647 ||||||||| ||||||||||||||||| ||||||||||||| || |||||| ||| | Sbjct 1765819 CTATGCCTGGGAAGGGTGAAGCCAGAGGAGACTCTGGTGGAGGTCCGTAGCGGTCCTGAC 1765878 Query 648 GTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || ||||||| || | | ||| |||||||| || Sbjct 1765879 GTACAAATCGGTCATTCAGCCTGGATATAGGGGTGA 1765914 >seq69 Length=14226257 Score = 86.0 bits (94), Expect = 3e-14 Identities = 99/132 (75%), Gaps = 5/132 (4%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | ||||| | ||| |||||| ||||||||| |||||| |||| |||| ||| Sbjct 8414429 GAGCATGAGCACACGTGTCAGGACCCAAAAGATGGTAAACTATCCCTGGGCAGGGCAAAG 8414370 Query 609 CCAGAGGAAACTCTGGTGGAGGCTC-GCAGCGGTTCTGGCGTGCAAATCGATCGTCAAAT 667 |||||||||||||| | | ||| | || ||| ||| ||||||||| | || || | Sbjct 8414369 CCAGAGGAAACTCT----GTGTCTCTGTAGTGGTCCTGACGTGCAAATGGGTCATCTGAC 8414314 Query 668 TTGGGTATAGGG 679 ||||||||||| Sbjct 8414313 CTGGGTATAGGG 8414302 >seq81 Length=12574705 Score = 84.2 bits (92), Expect = 9e-14 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625 || ||||||||||| ||||||||| |||||| |||| ||||||||||||||||||||| Sbjct 8682367 TTAGGACCCGAAAGGTGGTGAACTGTGCCTGGCCAGGGCGAAGCCAGAGGAAACTCTGGT 8682308 Query 626 GGAGGCTCGCAGCGGTTCT 644 |||| || ||| || || Sbjct 8682307 AGAGGTCCGTAGCCGTCCT 8682289 >seq80 Length=12639005 Score = 82.4 bits (90), Expect = 3e-13 Identities = 104/143 (73%), Gaps = 5/143 (3%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||| | |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 6640386 GAGTTGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 6640445 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | || ||||||||||| ||||||| | | ||||| ||| |||||| | Sbjct 6640446 ACCAGCACGAGACCGATAGTCAACAAGTACCCTAAGGGAAAGTTGA-----ACTTTGAAG 6640500 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || | ||||| Sbjct 6640501 AGAGAGTTCAAGAGGGCATGAAA 6640523 >seq130 Length=8343343 Score = 78.8 bits (86), Expect = 4e-12 Identities = 93/126 (74%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| || ||||||||||||| | || || ||||| | ||||| ||| ||| Sbjct 5097541 GAGTCGGACTGCTTGGGAATGCAGCCCAAAGCTGGTAGTAAACTCTATCTAAGGCTGAAT 5097482 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | || |||||||||||| ||||||| | | ||||| ||||||| |||||| || Sbjct 5097481 ACCAGCAAGAGACCGATAGTCAACAAGTACCATAAAGGAAAGTTGAAAAGAACTTTGAAA 5097422 Query 160 AGAGAG 165 |||||| Sbjct 5097421 AGAGAG 5097416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079864371650