Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= AAMG01000750.1 Length=102 Score E Sequences producing significant alignments: (Bits) Value seq104 154 7e-36 seq221 140 1e-31 seq72 98.7 5e-19 seq5 80.6 1e-13 seq29 71.6 6e-11 >seq104 Length=10432215 Score = 154 bits (170), Expect = 7e-36 Identities = 87/88 (99%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7744650 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 7744591 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCG 88 ||||||||||| |||||||||||||||| Sbjct 7744590 CCGAATCCCCGGCCCGCGGTGGGGCGCG 7744563 >seq221 Length=3734487 Score = 140 bits (154), Expect = 1e-31 Identities = 92/102 (90%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1049665 GGAAAACAAACTAACCGGGATTCCCTCAGTAAGGGCGAGTGAACAGGGAAGAGCCCAGCG 1049606 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 | |||||||| |||| |||||||||| ||| |||| ||||| Sbjct 1049605 CTGAATCCCCACCCCCAGGTGGGGCGCAGGAAATGTAGCGTA 1049564 >seq72 Length=13804493 Score = 98.7 bits (108), Expect = 5e-19 Identities = 86/104 (83%), Gaps = 5/104 (5%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGG--AAGAGCCCAG 58 ||||||||||| |||||||||||||||||||| |||||||||||| ||||||||| Sbjct 3194950 GGAAAAGAAACCAACCAGGATTCCCTCAGTAA--TAGAGTGAACAGGGTCAAGAGCCCA- 3194894 Query 59 CGCCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 |||||| | ||||| ||||||||| | ||| ||||||| || Sbjct 3194893 ATACGAATCTCTGCCCCACGGTGGGGCACAGGAAATGTGGCATA 3194850 >seq5 Length=36277496 Score = 80.6 bits (88), Expect = 1e-13 Identities = 78/102 (76%), Gaps = 10/102 (10%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| |||||| ||||||||||||| ||| ||||||||| Sbjct 21621516 GGAAAAGAAACTAACTAGGATTTCCTCAGTAACGGCAAGT----------GAGCCCAGCA 21621467 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 | |||||||| ||||| || | || |||| ||||||| || Sbjct 21621466 CTGAATCCCCACCCCGTGGCAGAGCATGGGAAATGTGGCCTA 21621425 >seq29 Length=23005217 Score = 71.6 bits (78), Expect = 6e-11 Identities = 70/88 (80%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||| |||| ||||||||||||| |||| | ||||||||||| ||| |||| | Sbjct 20107202 GGAAAAGAATCTAATCAGGATTCCCTCAATAACCTCAAGTGAACAGGG-CGAGGCCAGTG 20107144 Query 61 CCGAATCCCCGCCCCGC-GGTGGGGCGC 87 || || | | ||||| | ||| ||| || Sbjct 20107143 CCAAAACACTGCCCCACAGGTAGGGGGC 20107116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230386342320