Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq170 102 1e-19
seq180 86.0 1e-14
>seq170
Length=5892495
Score = 102 bits (112), Expect = 1e-19
Identities = 149/202 (74%), Gaps = 14/202 (7%)
Strand=Plus/Minus
Query 16 TCAGTGTAGCGCGC--GTG-CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 72
||| |||| ||| | ||| | |||| |||||||||| |||||||||||| ||| |||||
Sbjct 2651235 TCACTGTAACGCACACGTGGCAGCCCCGAACATCTAATGGCATCACAGACTTGTCATTGC 2651176
Query 73 CTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAAC-- 127
|| || | |||||| | ||| | |||||||||||||| | || ||||
Sbjct 2651175 -TCCGTCT-CAGGTGGCTGAACACCACTTGTCCCTCTAAGAAGTTGGGGGACATCAACAC 2651118
Query 128 --CAT-AGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCA 184
|| ||||| || ||| |||||| | | ||||| ||| ||||| ||||||||||
Sbjct 2651117 CTCAGGAGTCG-TGTAACTAGTTAGCATGCCAGAGTCTCATTCATTATCAGAATTAACCA 2651059
Query 185 GACAAATCACTCCACCAACTAA 206
|||||||| ||||| |||||||
Sbjct 2651058 GACAAATCGCTCCATCAACTAA 2651037
>seq180
Length=5441683
Score = 86.0 bits (94), Expect = 1e-14
Identities = 76/94 (81%), Gaps = 1/94 (1%)
Strand=Plus/Minus
Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218
|||||||| | |||||||||| |||||||||||| |||| || ||||| || ||||||||
Sbjct 1913464 GTCTCGTTTGGTATCGGAATTCACCAGACAAATCCCTCC-CCTACTAAAAATGGCCATGC 1913406
Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAA 252
|||| | | | || || | ||||||||| |||
Sbjct 1913405 ACCATCGCTCCCTGATTCGACAAAGAGCTACCAA 1913372
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796751192763
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |