Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq170 102 1e-19 seq180 86.0 1e-14 >seq170 Length=5892495 Score = 102 bits (112), Expect = 1e-19 Identities = 149/202 (74%), Gaps = 14/202 (7%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGC--GTG-CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 72 ||| |||| ||| | ||| | |||| |||||||||| |||||||||||| ||| ||||| Sbjct 2651235 TCACTGTAACGCACACGTGGCAGCCCCGAACATCTAATGGCATCACAGACTTGTCATTGC 2651176 Query 73 CTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAAC-- 127 || || | |||||| | ||| | |||||||||||||| | || |||| Sbjct 2651175 -TCCGTCT-CAGGTGGCTGAACACCACTTGTCCCTCTAAGAAGTTGGGGGACATCAACAC 2651118 Query 128 --CAT-AGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCA 184 || ||||| || ||| |||||| | | ||||| ||| ||||| |||||||||| Sbjct 2651117 CTCAGGAGTCG-TGTAACTAGTTAGCATGCCAGAGTCTCATTCATTATCAGAATTAACCA 2651059 Query 185 GACAAATCACTCCACCAACTAA 206 |||||||| ||||| ||||||| Sbjct 2651058 GACAAATCGCTCCATCAACTAA 2651037 >seq180 Length=5441683 Score = 86.0 bits (94), Expect = 1e-14 Identities = 76/94 (81%), Gaps = 1/94 (1%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 |||||||| | |||||||||| |||||||||||| |||| || ||||| || |||||||| Sbjct 1913464 GTCTCGTTTGGTATCGGAATTCACCAGACAAATCCCTCC-CCTACTAAAAATGGCCATGC 1913406 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAA 252 |||| | | | || || | ||||||||| ||| Sbjct 1913405 ACCATCGCTCCCTGATTCGACAAAGAGCTACCAA 1913372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796751192763