Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq187 100 5e-19
seq131 91.5 2e-16
seq61 87.8 3e-15
seq57 87.8 3e-15
seq386 84.2 4e-14
seq416 82.4 1e-13
seq26 75.2 2e-11
>seq187
Length=5079040
Score = 100 bits (110), Expect = 5e-19
Identities = 92/114 (81%), Gaps = 2/114 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||| |||||||| || | |||||| | ||||| | || | ||| |||| || ||||
Sbjct 975949 GTAGGAGAGGAAATGCAGG-TTCAGAC-ATTTGGTGTATGTGTCTGGCTGAGGAGCCAGT 976006
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
| |||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 976007 GAGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 976060
>seq131
Length=8015323
Score = 91.5 bits (100), Expect = 2e-16
Identities = 87/109 (80%), Gaps = 3/109 (3%)
Strand=Plus/Plus
Query 6 AGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGC 65
||||||||||| | |||||| |||||| | || | || |||| |||||||| ||
Sbjct 3653868 AGAGGAACCGCAGG-TTCAGAC--ATTGGTGTATGTGCTTGGCTGAGGAGGCAGTGGAGC 3653924
Query 66 GAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
||||||||||||| |||||||| ||||||| || |||||||||||||
Sbjct 3653925 GAAGCTACCATCTATGGGATTATGACTGAACGACTGTAAGTCAGAATCC 3653973
>seq61
Length=15428013
Score = 87.8 bits (96), Expect = 3e-15
Identities = 65/76 (86%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 48 CTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTC 107
|||| || ||||| |||||||||||||||| |||||||| |||||||||||||||||
Sbjct 14725592 CTGAGGAGCCAGTGGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTC 14725533
Query 108 AGAATCCATGCCAGAA 123
||||||| ||||||
Sbjct 14725532 AGAATCCCGCCCAGAA 14725517
>seq57
Length=15922913
Score = 87.8 bits (96), Expect = 3e-15
Identities = 97/127 (76%), Gaps = 2/127 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||| ||||||||||| | |||||| | || | || | || |||| ||| || |
Sbjct 685848 GTACAAGAGGAACCGCAGG-TTCAGACGTCT-GGCGTATGTGCTTGGCTGAACAGCCAAT 685791
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||||||| |||||||| ||||| |||||||||||||||||| |||
Sbjct 685790 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAATGCCTCTAAGTCAGAATCCCGCCCA 685731
Query 121 GAACGGG 127
| | |||
Sbjct 685730 GGAAGGG 685724
>seq386
Length=416272
Score = 84.2 bits (92), Expect = 4e-14
Identities = 86/110 (78%), Gaps = 2/110 (2%)
Strand=Plus/Plus
Query 5 GAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCG 64
|||||||||| | | |||||| | |||| | || | ||| |||| || || || |
Sbjct 415240 GAGAGGAACCACAGG-TTCAGAC-ATGTGGTGTATGTGCCTGGCTGAGGAGCCAATGGGG 415297
Query 65 CGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
||||||||| |||| |||||||| ||||||||||||||||||||||||
Sbjct 415298 TGAAGCTACCTTCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 415347
>seq416
Length=321153
Score = 82.4 bits (90), Expect = 1e-13
Identities = 94/120 (78%), Gaps = 5/120 (4%)
Strand=Plus/Minus
Query 5 GAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCG 64
|| ||||||| | | |||| | || ||||| | || | || |||| || || || |
Sbjct 211108 GAAAGGAACCACAGG-TTCACA-TATTTGGTGTATGTGCTTGGCTGAGGAGCCAATGG-G 211052
Query 65 CGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATG-CCAGAA 123
||||||||||||||| |||||||| ||||| |||||||||||||||| |||| ||||||
Sbjct 211051 CGAAGCTACCATCTGTGGGATTATGACTGAAGGCCTCTAAGTCAGAAT-CATGCCCAGAA 210993
Score = 80.6 bits (88), Expect = 4e-13
Identities = 92/121 (76%), Gaps = 2/121 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||| ||||||||| | | |||||| | ||||| | || | || |||| || || |
Sbjct 257795 GTACCAGAGGAACCACAGG-TTCAGAC-ATTTGGTGTATGTGCTTGACTGAGGAGCCAAT 257852
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| ||||| ||||||||| |||||| | ||||| |||||||||||||||||| ||||
Sbjct 257853 GTGGCGAACATACCATCTGTGGGATTAGGACTGAATGCCTCTAAGTCAGAATCCCGGCCA 257912
Query 121 G 121
|
Sbjct 257913 G 257913
>seq26
Length=23966317
Score = 75.2 bits (82), Expect = 2e-11
Identities = 91/119 (76%), Gaps = 4/119 (3%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||| ||| |||||| | | |||||| | ||||| | || | || |||| || || |
Sbjct 23893059 GTAGGAGCGGAACCACAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 23893116
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCC 119
| |||||||||||||||| ||||||| ||||| ||||||||||||||||| ||||
Sbjct 23893117 GG-GCGAAGCTACCATCTGTGGGATTATTACTGAAGTCCTCTAAGTCAGAATCC-TGCC 23893173
Score = 73.4 bits (80), Expect = 6e-11
Identities = 61/72 (85%), Gaps = 2/72 (3%)
Strand=Plus/Plus
Query 48 CTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTC 107
|||| ||||| || |||||||||||||||| || ||||| ||||| |||||||||||
Sbjct 23681182 CTGAGGAGGCAATGG-GCGAAGCTACCATCTGTGGGGTTATGACTGAAGGCCTCTAAGTC 23681240
Query 108 AGAATCCATGCC 119
||||||| ||||
Sbjct 23681241 AGAATCC-TGCC 23681251
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 819149820672
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |