Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq187 100 5e-19 seq131 91.5 2e-16 seq61 87.8 3e-15 seq57 87.8 3e-15 seq386 84.2 4e-14 seq416 82.4 1e-13 seq26 75.2 2e-11 >seq187 Length=5079040 Score = 100 bits (110), Expect = 5e-19 Identities = 92/114 (81%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| |||||||| || | |||||| | ||||| | || | ||| |||| || |||| Sbjct 975949 GTAGGAGAGGAAATGCAGG-TTCAGAC-ATTTGGTGTATGTGTCTGGCTGAGGAGCCAGT 976006 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 976007 GAGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 976060 >seq131 Length=8015323 Score = 91.5 bits (100), Expect = 2e-16 Identities = 87/109 (80%), Gaps = 3/109 (3%) Strand=Plus/Plus Query 6 AGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGC 65 ||||||||||| | |||||| |||||| | || | || |||| |||||||| || Sbjct 3653868 AGAGGAACCGCAGG-TTCAGAC--ATTGGTGTATGTGCTTGGCTGAGGAGGCAGTGGAGC 3653924 Query 66 GAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 ||||||||||||| |||||||| ||||||| || ||||||||||||| Sbjct 3653925 GAAGCTACCATCTATGGGATTATGACTGAACGACTGTAAGTCAGAATCC 3653973 >seq61 Length=15428013 Score = 87.8 bits (96), Expect = 3e-15 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 48 CTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTC 107 |||| || ||||| |||||||||||||||| |||||||| ||||||||||||||||| Sbjct 14725592 CTGAGGAGCCAGTGGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTC 14725533 Query 108 AGAATCCATGCCAGAA 123 ||||||| |||||| Sbjct 14725532 AGAATCCCGCCCAGAA 14725517 >seq57 Length=15922913 Score = 87.8 bits (96), Expect = 3e-15 Identities = 97/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||| ||||||||||| | |||||| | || | || | || |||| ||| || | Sbjct 685848 GTACAAGAGGAACCGCAGG-TTCAGACGTCT-GGCGTATGTGCTTGGCTGAACAGCCAAT 685791 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||||| |||||||| ||||| |||||||||||||||||| ||| Sbjct 685790 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAATGCCTCTAAGTCAGAATCCCGCCCA 685731 Query 121 GAACGGG 127 | | ||| Sbjct 685730 GGAAGGG 685724 >seq386 Length=416272 Score = 84.2 bits (92), Expect = 4e-14 Identities = 86/110 (78%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 5 GAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCG 64 |||||||||| | | |||||| | |||| | || | ||| |||| || || || | Sbjct 415240 GAGAGGAACCACAGG-TTCAGAC-ATGTGGTGTATGTGCCTGGCTGAGGAGCCAATGGGG 415297 Query 65 CGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 ||||||||| |||| |||||||| |||||||||||||||||||||||| Sbjct 415298 TGAAGCTACCTTCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 415347 >seq416 Length=321153 Score = 82.4 bits (90), Expect = 1e-13 Identities = 94/120 (78%), Gaps = 5/120 (4%) Strand=Plus/Minus Query 5 GAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCG 64 || ||||||| | | |||| | || ||||| | || | || |||| || || || | Sbjct 211108 GAAAGGAACCACAGG-TTCACA-TATTTGGTGTATGTGCTTGGCTGAGGAGCCAATGG-G 211052 Query 65 CGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATG-CCAGAA 123 ||||||||||||||| |||||||| ||||| |||||||||||||||| |||| |||||| Sbjct 211051 CGAAGCTACCATCTGTGGGATTATGACTGAAGGCCTCTAAGTCAGAAT-CATGCCCAGAA 210993 Score = 80.6 bits (88), Expect = 4e-13 Identities = 92/121 (76%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||| ||||||||| | | |||||| | ||||| | || | || |||| || || | Sbjct 257795 GTACCAGAGGAACCACAGG-TTCAGAC-ATTTGGTGTATGTGCTTGACTGAGGAGCCAAT 257852 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | ||||| ||||||||| |||||| | ||||| |||||||||||||||||| |||| Sbjct 257853 GTGGCGAACATACCATCTGTGGGATTAGGACTGAATGCCTCTAAGTCAGAATCCCGGCCA 257912 Query 121 G 121 | Sbjct 257913 G 257913 >seq26 Length=23966317 Score = 75.2 bits (82), Expect = 2e-11 Identities = 91/119 (76%), Gaps = 4/119 (3%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| ||| |||||| | | |||||| | ||||| | || | || |||| || || | Sbjct 23893059 GTAGGAGCGGAACCACAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 23893116 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCC 119 | |||||||||||||||| ||||||| ||||| ||||||||||||||||| |||| Sbjct 23893117 GG-GCGAAGCTACCATCTGTGGGATTATTACTGAAGTCCTCTAAGTCAGAATCC-TGCC 23893173 Score = 73.4 bits (80), Expect = 6e-11 Identities = 61/72 (85%), Gaps = 2/72 (3%) Strand=Plus/Plus Query 48 CTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTC 107 |||| ||||| || |||||||||||||||| || ||||| ||||| ||||||||||| Sbjct 23681182 CTGAGGAGGCAATGG-GCGAAGCTACCATCTGTGGGGTTATGACTGAAGGCCTCTAAGTC 23681240 Query 108 AGAATCCATGCC 119 ||||||| |||| Sbjct 23681241 AGAATCC-TGCC 23681251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819149820672