Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq98 181 3e-43 seq138 165 2e-38 seq7 154 4e-35 seq300 147 7e-33 seq37 138 3e-30 seq11 120 9e-25 seq25 84.2 7e-14 seq1 84.2 7e-14 >seq98 Length=10947149 Score = 181 bits (200), Expect = 3e-43 Identities = 171/213 (80%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 7 ATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCG 65 |||||||||||| |||| | |||||| ||||| ||||| || ||||||||||||| Sbjct 8093030 ATTCCAATTACAGGACCTCGAAAGAGTTTTGTATTGTTATTTTTTTTCACTACCTCCCCA 8092971 Query 66 TGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCA 125 || |||| ||||||| | || ||||||||||| ||||||||||||||||| ||||||| Sbjct 8092970 GGTTGGGAGAGGGTAATATACGTGCCTGCTGCCTACCTTGGATGTGGTAGCCATTTCTCA 8092911 Query 126 GGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGAT-ACCATGG-TAGGC 183 ||||| |||||| ||| |||| || |||| | |||||| | |||| ||||||| |||| Sbjct 8092910 GGCTCTCTCTCCAGAACTGAACACTGATTCTCTGTTACCTG-TGATCACCATGGACAGGC 8092852 Query 184 CACTATCCTACCATCGAAAGTTGATAGGGCAGA 216 |||||||| ||||||||||||||||| Sbjct 8092851 ATGGTGACTACCATCCAAAGTTGATAGGGCAGA 8092819 >seq138 Length=7568777 Score = 165 bits (182), Expect = 2e-38 Identities = 133/161 (83%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 76 GGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCT 135 ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 5786556 GGGTAATTTGCACGCCTGCTGCCTTCCTTGGATGTGGTAGCCATTTCTCAGGCTCCCTCT 5786615 Query 136 CCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACC 195 || |||| ||||||| ||||||| | |||| | | |||||||||| | |||| Sbjct 5786616 CCTGAATTGAACCCTGATTCCCCATCACCCATAGTCACCATGGTAGACATGGGGATTACC 5786675 Query 196 ATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCC 236 ||| ||| |||| ||| |||| ||||||||| ||||||| Sbjct 5786676 ATCAAAAATTGACAGGACAGACATTTGAATGGGTCATCGCC 5786716 >seq7 Length=35051756 Score = 154 bits (170), Expect = 4e-35 Identities = 127/152 (84%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 76 GGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCT 135 |||||||| || | |||||||||||||||||||||||||||| ||||||||||| ||| | Sbjct 10328308 GGGTAATTGGCACACCTGCTGCCTTCCTTGGATGTGGTAGCCATTTCTCAGGCTTCCTTT 10328367 Query 136 CCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTAT-CCTAC 194 | ||||| |||||| ||||||| | ||| || | ||||||||||| || || |||| Sbjct 10328368 CTGGAATTAAACCCTGATTCCCCATCACCTGTGGTCACCATGGTAGG-CATGATGACTAC 10328426 Query 195 CATCGAAAGTTGATAGGGCAGAAATTTGAATG 226 |||||||||| |||||||||| ||| ||||| Sbjct 10328427 TATCGAAAGTTCATAGGGCAGACATTCGAATG 10328458 >seq300 Length=1471515 Score = 147 bits (162), Expect = 7e-33 Identities = 117/141 (83%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 76 GGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCT 135 ||||||||||| | ||||||||||||||||||||||||| |||||||| ||| | ||| | Sbjct 966599 GGGTAATTTGCACTCCTGCTGCCTTCCTTGGATGTGGTAACCGTTTCTTAGGATACCTTT 966658 Query 136 CCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACC 195 | |||||| |||||| ||||||| | |||||| | || ||||||||| | ||||| Sbjct 966659 CTGGAATCAAACCCTGATTCCCCATCACCCGTGGTCACAATGGTAGGCATGGAGACTACC 966718 Query 196 ATCGAAAGTTGATAGGGCAGA 216 || ||||||| |||||||||| Sbjct 966719 ATTGAAAGTTAATAGGGCAGA 966739 >seq37 Length=20274005 Score = 138 bits (152), Expect = 3e-30 Identities = 123/152 (81%), Gaps = 4/152 (3%) Strand=Plus/Plus Query 5 TCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCC 63 |||||||||||| | | | |||||||| ||||||| ||||| | |||||||||||| Sbjct 19725461 TCATTCCAATTATAGGGCTTCAAAAGAGTCCTGTAT---TATTTTTCATCACTACCTCCC 19725517 Query 64 CGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCT 123 | ||||| | ||||||| ||| | |||||| |||||||||||||||||||| ||||| Sbjct 19725518 CCAGTCGGTAGTGGGTAACTTGTGTGCCTGCAGCCTTCCTTGGATGTGGTAGTTATTTCT 19725577 Query 124 CAGGCTCCCTCTCCGGAATCGAACCCTAATTC 155 ||| ||| |||||| |||| | ||||| |||| Sbjct 19725578 CAGCCTCGCTCTCCAGAATTGGACCCTGATTC 19725609 Score = 96.9 bits (106), Expect = 1e-17 Identities = 88/110 (80%), Gaps = 1/110 (1%) Strand=Plus/Plus Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454 |||| ||| |||||| |||||| ||||||| | ||||||||||| | || | || Sbjct 19725651 CAAAGGAACCATAACTAATTTAACAAGCCATTTGAGGTTTCACTGTACTGGTTTTGTGTA 19725710 Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||| ||| |||||| ||||||||||| |||||||| |||||||||| Sbjct 19725711 CTTAGAAATGTGTGGCTTGATCTTTGAGACGAGCATATG-CTACTGGCAG 19725759 >seq11 Length=32736506 Score = 120 bits (132), Expect = 9e-25 Identities = 134/174 (77%), Gaps = 10/174 (6%) Strand=Plus/Plus Query 338 TTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA-AG----GTACT 392 ||||| |||||| ||||||||||||||||||| |||||||| | || | || | | Sbjct 23606046 TTTTTGGCATGTGTTAGCTCTAGAATTACCACAGTTATCCAAGGAGGAGAGGAGTGAGCA 23606105 Query 393 ATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAG--ATTGCT 450 | |||| ||| | ||| |||||| |||||||| |||||| |||||| | ||| Sbjct 23606106 ACCAAAGGAACCAAAACCAATTTAACAAGCCATTCACAGTTTGACTGTACTGGCCATGC- 23606164 Query 451 TATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||| ||||||||||||| ||| ||| |||||||| |||| | |||||||||| Sbjct 23606165 -ATACGTAGACATGCATGGATTATTCTCTGAGACAAACATACG-CTACTGGCAG 23606216 >seq25 Length=23991539 Score = 84.2 bits (92), Expect = 7e-14 Identities = 101/136 (74%), Gaps = 1/136 (1%) Strand=Plus/Plus Query 75 TGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTC 134 ||||| | |||| || || | |||| |||||||||||| || |||||||| | ||||| Sbjct 942259 TGGGTCACTTGCATGC-TGTTCCCTTTCTTGGATGTGGTCGCTGTTTCTCAAGACCCCTC 942317 Query 135 TCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTAC 194 ||| || | ||||||| ||||| || |||| |||||| |||||| |||| Sbjct 942318 TCCAGAGTTGAACCCTGATTCCTTGTCACCCAAGATTACCATTGTAGGCATGGTGACTAC 942377 Query 195 CATCGAAAGTTGATAG 210 |||| ||| ||||||| Sbjct 942378 CATCAAAAATTGATAG 942393 >seq1 Length=45942467 Score = 84.2 bits (92), Expect = 7e-14 Identities = 74/91 (81%), Gaps = 1/91 (1%) Strand=Plus/Minus Query 67 GTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAG 126 ||| ||| ||||||||||| | |||| |||| ||||||||||||||||| |||||| || Sbjct 28817455 GTCTGGAATGGGTAATTTGTGTGCCTACTGCTTTCCTTGGATGTGGTAG-GGTTTCTTAG 28817397 Query 127 GCTCCCTCTCCGGAATCGAACCCTAATTCCC 157 | | | ||||| |||| || ||| |||||| Sbjct 28817396 GTTTCATCTCCAGAATTCAATCCTGATTCCC 28817366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510304497408