Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq98 181 3e-43
seq138 165 2e-38
seq7 154 4e-35
seq300 147 7e-33
seq37 138 3e-30
seq11 120 9e-25
seq25 84.2 7e-14
seq1 84.2 7e-14
>seq98
Length=10947149
Score = 181 bits (200), Expect = 3e-43
Identities = 171/213 (80%), Gaps = 4/213 (2%)
Strand=Plus/Minus
Query 7 ATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCG 65
|||||||||||| |||| | |||||| ||||| ||||| || |||||||||||||
Sbjct 8093030 ATTCCAATTACAGGACCTCGAAAGAGTTTTGTATTGTTATTTTTTTTCACTACCTCCCCA 8092971
Query 66 TGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCA 125
|| |||| ||||||| | || ||||||||||| ||||||||||||||||| |||||||
Sbjct 8092970 GGTTGGGAGAGGGTAATATACGTGCCTGCTGCCTACCTTGGATGTGGTAGCCATTTCTCA 8092911
Query 126 GGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGAT-ACCATGG-TAGGC 183
||||| |||||| ||| |||| || |||| | |||||| | |||| ||||||| ||||
Sbjct 8092910 GGCTCTCTCTCCAGAACTGAACACTGATTCTCTGTTACCTG-TGATCACCATGGACAGGC 8092852
Query 184 CACTATCCTACCATCGAAAGTTGATAGGGCAGA 216
|||||||| |||||||||||||||||
Sbjct 8092851 ATGGTGACTACCATCCAAAGTTGATAGGGCAGA 8092819
>seq138
Length=7568777
Score = 165 bits (182), Expect = 2e-38
Identities = 133/161 (83%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 76 GGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCT 135
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 5786556 GGGTAATTTGCACGCCTGCTGCCTTCCTTGGATGTGGTAGCCATTTCTCAGGCTCCCTCT 5786615
Query 136 CCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACC 195
|| |||| ||||||| ||||||| | |||| | | |||||||||| | ||||
Sbjct 5786616 CCTGAATTGAACCCTGATTCCCCATCACCCATAGTCACCATGGTAGACATGGGGATTACC 5786675
Query 196 ATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCC 236
||| ||| |||| ||| |||| ||||||||| |||||||
Sbjct 5786676 ATCAAAAATTGACAGGACAGACATTTGAATGGGTCATCGCC 5786716
>seq7
Length=35051756
Score = 154 bits (170), Expect = 4e-35
Identities = 127/152 (84%), Gaps = 2/152 (1%)
Strand=Plus/Plus
Query 76 GGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCT 135
|||||||| || | |||||||||||||||||||||||||||| ||||||||||| ||| |
Sbjct 10328308 GGGTAATTGGCACACCTGCTGCCTTCCTTGGATGTGGTAGCCATTTCTCAGGCTTCCTTT 10328367
Query 136 CCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTAT-CCTAC 194
| ||||| |||||| ||||||| | ||| || | ||||||||||| || || ||||
Sbjct 10328368 CTGGAATTAAACCCTGATTCCCCATCACCTGTGGTCACCATGGTAGG-CATGATGACTAC 10328426
Query 195 CATCGAAAGTTGATAGGGCAGAAATTTGAATG 226
|||||||||| |||||||||| ||| |||||
Sbjct 10328427 TATCGAAAGTTCATAGGGCAGACATTCGAATG 10328458
>seq300
Length=1471515
Score = 147 bits (162), Expect = 7e-33
Identities = 117/141 (83%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 76 GGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCT 135
||||||||||| | ||||||||||||||||||||||||| |||||||| ||| | ||| |
Sbjct 966599 GGGTAATTTGCACTCCTGCTGCCTTCCTTGGATGTGGTAACCGTTTCTTAGGATACCTTT 966658
Query 136 CCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACC 195
| |||||| |||||| ||||||| | |||||| | || ||||||||| | |||||
Sbjct 966659 CTGGAATCAAACCCTGATTCCCCATCACCCGTGGTCACAATGGTAGGCATGGAGACTACC 966718
Query 196 ATCGAAAGTTGATAGGGCAGA 216
|| ||||||| ||||||||||
Sbjct 966719 ATTGAAAGTTAATAGGGCAGA 966739
>seq37
Length=20274005
Score = 138 bits (152), Expect = 3e-30
Identities = 123/152 (81%), Gaps = 4/152 (3%)
Strand=Plus/Plus
Query 5 TCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCC 63
|||||||||||| | | | |||||||| ||||||| ||||| | ||||||||||||
Sbjct 19725461 TCATTCCAATTATAGGGCTTCAAAAGAGTCCTGTAT---TATTTTTCATCACTACCTCCC 19725517
Query 64 CGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCT 123
| ||||| | ||||||| ||| | |||||| |||||||||||||||||||| |||||
Sbjct 19725518 CCAGTCGGTAGTGGGTAACTTGTGTGCCTGCAGCCTTCCTTGGATGTGGTAGTTATTTCT 19725577
Query 124 CAGGCTCCCTCTCCGGAATCGAACCCTAATTC 155
||| ||| |||||| |||| | ||||| ||||
Sbjct 19725578 CAGCCTCGCTCTCCAGAATTGGACCCTGATTC 19725609
Score = 96.9 bits (106), Expect = 1e-17
Identities = 88/110 (80%), Gaps = 1/110 (1%)
Strand=Plus/Plus
Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454
|||| ||| |||||| |||||| ||||||| | ||||||||||| | || | ||
Sbjct 19725651 CAAAGGAACCATAACTAATTTAACAAGCCATTTGAGGTTTCACTGTACTGGTTTTGTGTA 19725710
Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
|||||| ||| |||||| ||||||||||| |||||||| ||||||||||
Sbjct 19725711 CTTAGAAATGTGTGGCTTGATCTTTGAGACGAGCATATG-CTACTGGCAG 19725759
>seq11
Length=32736506
Score = 120 bits (132), Expect = 9e-25
Identities = 134/174 (77%), Gaps = 10/174 (6%)
Strand=Plus/Plus
Query 338 TTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA-AG----GTACT 392
||||| |||||| ||||||||||||||||||| |||||||| | || | || | |
Sbjct 23606046 TTTTTGGCATGTGTTAGCTCTAGAATTACCACAGTTATCCAAGGAGGAGAGGAGTGAGCA 23606105
Query 393 ATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAG--ATTGCT 450
| |||| ||| | ||| |||||| |||||||| |||||| |||||| | |||
Sbjct 23606106 ACCAAAGGAACCAAAACCAATTTAACAAGCCATTCACAGTTTGACTGTACTGGCCATGC- 23606164
Query 451 TATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
|||| ||||||||||||| ||| ||| |||||||| |||| | ||||||||||
Sbjct 23606165 -ATACGTAGACATGCATGGATTATTCTCTGAGACAAACATACG-CTACTGGCAG 23606216
>seq25
Length=23991539
Score = 84.2 bits (92), Expect = 7e-14
Identities = 101/136 (74%), Gaps = 1/136 (1%)
Strand=Plus/Plus
Query 75 TGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTC 134
||||| | |||| || || | |||| |||||||||||| || |||||||| | |||||
Sbjct 942259 TGGGTCACTTGCATGC-TGTTCCCTTTCTTGGATGTGGTCGCTGTTTCTCAAGACCCCTC 942317
Query 135 TCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTAC 194
||| || | ||||||| ||||| || |||| |||||| |||||| ||||
Sbjct 942318 TCCAGAGTTGAACCCTGATTCCTTGTCACCCAAGATTACCATTGTAGGCATGGTGACTAC 942377
Query 195 CATCGAAAGTTGATAG 210
|||| ||| |||||||
Sbjct 942378 CATCAAAAATTGATAG 942393
>seq1
Length=45942467
Score = 84.2 bits (92), Expect = 7e-14
Identities = 74/91 (81%), Gaps = 1/91 (1%)
Strand=Plus/Minus
Query 67 GTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAG 126
||| ||| ||||||||||| | |||| |||| ||||||||||||||||| |||||| ||
Sbjct 28817455 GTCTGGAATGGGTAATTTGTGTGCCTACTGCTTTCCTTGGATGTGGTAG-GGTTTCTTAG 28817397
Query 127 GCTCCCTCTCCGGAATCGAACCCTAATTCCC 157
| | | ||||| |||| || ||| ||||||
Sbjct 28817396 GTTTCATCTCCAGAATTCAATCCTGATTCCC 28817366
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510304497408
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |