Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq88 116 3e-21
seq9 104 2e-17
>seq88
Length=11737398
Score = 116 bits (128), Expect = 3e-21
Identities = 112/144 (78%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108
||||||||| || ||||| |||||||| || ||||| || || |||| ||||| ||
Sbjct 370059 GGTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATTGTTCCCAGGTTCTGCTG 370118
Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168
|| ||||| ||||| || | ||||||||| | ||||||||| || || ||||| ||
Sbjct 370119 GTTGCTCTTCCGATTACAGGAATCCTTGTAGAGCATGTACGGGGTACCTGTCTCTGTCTG 370178
Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192
|||||||||||||| | ||||||
Sbjct 370179 AGACTCAATGATGGCATACCAAAG 370202
Score = 82.4 bits (90), Expect = 6e-11
Identities = 114/157 (73%), Gaps = 2/157 (1%)
Strand=Plus/Plus
Query 65695 CTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCG 65754
||||||||| |||| ||| |||| || || || || |||||||||| || ||||| |
Sbjct 366509 CTCCTTGGCCAGTTCACAACTGGCTTCCAGGGCTCCATAATAAATGGTTTCAAAAATTTG 366568
Query 65755 TCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACC-CATCAGGACAAAAGTGT 65813
||| | | | || || ||||| | || ||||| |||||||| ||||| |
Sbjct 366569 CTTATTCAATAACTGGGCGTCTGGACTCTCAAAAGG-ATACCTCATCAGGATAAAAGCAT 366627
Query 65814 CGGCCAGACCTTGAACTCCAATACCGATGGGACGATG 65850
| ||||||||||| || ||||| || ||||| |||||
Sbjct 366628 CTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATG 366664
>seq9
Length=34412642
Score = 104 bits (114), Expect = 2e-17
Identities = 87/107 (81%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329
||||||||||| || | ||||| || |||||||||||||| || ||| ||| ||||||
Sbjct 15798580 CAGGAGGTGCAGGTTCCAGAGGCTCGCTGTTTCTACGGCTTTCAAATTCTCATCGAGAAT 15798639
Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376
|| ||||| |||||||||||| | || || || || |||||||| ||
Sbjct 15798640 GTTCACTCAGAGATGTACAGTTTGCTAATAGACACTTACATCAGAGA 15798686
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397537362788720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |