Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq88 116 3e-21 seq9 104 2e-17 >seq88 Length=11737398 Score = 116 bits (128), Expect = 3e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||||||||| || ||||| |||||||| || ||||| || || |||| ||||| || Sbjct 370059 GGTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATTGTTCCCAGGTTCTGCTG 370118 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| ||||| || | ||||||||| | ||||||||| || || ||||| || Sbjct 370119 GTTGCTCTTCCGATTACAGGAATCCTTGTAGAGCATGTACGGGGTACCTGTCTCTGTCTG 370178 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 |||||||||||||| | |||||| Sbjct 370179 AGACTCAATGATGGCATACCAAAG 370202 Score = 82.4 bits (90), Expect = 6e-11 Identities = 114/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 65695 CTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCG 65754 ||||||||| |||| ||| |||| || || || || |||||||||| || ||||| | Sbjct 366509 CTCCTTGGCCAGTTCACAACTGGCTTCCAGGGCTCCATAATAAATGGTTTCAAAAATTTG 366568 Query 65755 TCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACC-CATCAGGACAAAAGTGT 65813 ||| | | | || || ||||| | || ||||| |||||||| ||||| | Sbjct 366569 CTTATTCAATAACTGGGCGTCTGGACTCTCAAAAGG-ATACCTCATCAGGATAAAAGCAT 366627 Query 65814 CGGCCAGACCTTGAACTCCAATACCGATGGGACGATG 65850 | ||||||||||| || ||||| || ||||| ||||| Sbjct 366628 CTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATG 366664 >seq9 Length=34412642 Score = 104 bits (114), Expect = 2e-17 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| || | ||||| || |||||||||||||| || ||| ||| |||||| Sbjct 15798580 CAGGAGGTGCAGGTTCCAGAGGCTCGCTGTTTCTACGGCTTTCAAATTCTCATCGAGAAT 15798639 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 || ||||| |||||||||||| | || || || || |||||||| || Sbjct 15798640 GTTCACTCAGAGATGTACAGTTTGCTAATAGACACTTACATCAGAGA 15798686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397537362788720