Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq15008 174 2e-41 seq12356 95.1 2e-17 seq17755 84.2 3e-14 seq18063 75.2 2e-11 >seq15008 Length=476845 Score = 174 bits (192), Expect = 2e-41 Identities = 182/234 (78%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| ||||| ||| |||||| |||||| | Sbjct 427847 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCCGCACTTACTGGGAATT-C 427790 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||||||||||| ||||| | || Sbjct 427789 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 427730 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| |||| ||| | || || ||| |||||||||||||||||| Sbjct 427729 ACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCA 427670 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 427669 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 427617 >seq12356 Length=13565125 Score = 95.1 bits (104), Expect = 2e-17 Identities = 120/161 (75%), Gaps = 3/161 (2%) Strand=Plus/Plus Query 74 AACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TTACCCGGACCTGTC 132 || ||||||||| | ||||||||||||| ||||| | ||||||| |||| | Sbjct 905775 AATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTTACCCGCGCCTGCC 905834 Query 133 GGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCT 192 || ||| | || | ||| |||||||||||||||||| |||| || ||||| Sbjct 905835 AGCGTAGGGTAGGCACACACTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCGGA-CATCT 905893 Query 193 AAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||||||||||||||||||||||| ||||| || ||||| Sbjct 905894 AAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 905933 >seq17755 Length=25620257 Score = 84.2 bits (92), Expect = 3e-14 Identities = 129/180 (72%), Gaps = 3/180 (2%) Strand=Plus/Minus Query 21 GTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATT 80 |||||||| ||||| ||||| ||| ||||| |||||| | || || | | || |||| Sbjct 22838814 GTCAACGCAAGCTT-ATGACCCGCATTTACTGGGAATT-CTTCATTCATGGGGAATAATT 22838757 Query 81 GCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TTACCCGGACCTGTCGGCCAAG 139 ||||| | ||||||||||||| | ||||| | ||||| | ||||| || | Sbjct 22838756 GCAATCCCCGATCCCCATCACGAATAGGGTTCAAGGGGTTACCTGCACCTGCTGGTGTGG 22838697 Query 140 GTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCA 199 | | || || ||| |||||||||| ||||||| |||| | ||||||||||||| Sbjct 22838696 GGTAGGCACACGCTGAGCCAGTCAGTGTAGCCCGCGTGCAGCCCCGGACATCTAAGGGCA 22838637 >seq18063 Length=4859903 Score = 75.2 bits (82), Expect = 2e-11 Identities = 61/73 (84%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220 ||||| |||| | | ||| |||| | ||||||||||| |||||||||||||||||| ||| Sbjct 749585 TCAGTATAGCACACATGCAGCCCTGGACATCTAAGGGTATCACAGACCTGTTATTG-CTC 749643 Query 221 AAACTTCCGTGGC 233 || ||| ||||| Sbjct 749644 AATCTTGGGTGGC 749656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751789303230