Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq27042 149 3e-33 seq20631 149 3e-33 seq22352 138 5e-30 seq16307 93.3 2e-16 seq1 87.8 7e-15 seq10439 84.2 9e-14 seq8020 82.4 3e-13 seq6244 82.4 3e-13 seq1330 80.6 1e-12 >seq27042 Length=17493 Score = 149 bits (164), Expect = 3e-33 Identities = 105/120 (88%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 827 TGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTG 768 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 767 GTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 708 >seq20631 Length=3741062 Score = 149 bits (164), Expect = 3e-33 Identities = 105/120 (88%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 2512973 TGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTG 2513032 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 2513033 GTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 2513092 >seq22352 Length=5151969 Score = 138 bits (152), Expect = 5e-30 Identities = 103/121 (85%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 563 CTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCT 622 ||||| |||||| ||||| ||||||||||||||| ||||||||||| |||||||||| Sbjct 4476082 CTGTTAGGACCCAAAAGACGGTGAACTATGCCTGGGCGGGGTGAAGCCAAAGGAAACTCT 4476141 Query 623 GGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCG 682 |||||||| || |||||| ||| ||||||||||| ||||| | |||||||||||||| Sbjct 4476142 GGTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCG 4476201 Query 683 A 683 | Sbjct 4476202 A 4476202 >seq16307 Length=1410148 Score = 93.3 bits (102), Expect = 2e-16 Identities = 96/123 (78%), Gaps = 7/123 (6%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAAT-AGGGTGAAGCCAGAGGAAACTCT 622 |||||||||| |||||||||||| ||||||||| | |||||||||||||||||| ||| Sbjct 663426 TGTTGGGACCTGAAAGATGGTGACCTATGCCTGGGTCAGGGTGAAGCCAGAGGAA--TCT 663369 Query 623 GGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATC----GATCGTCAAATTTGGGTATAGG 678 ||||||| || || ||| ||| | || ||||| | || || | |||| ||||| Sbjct 663368 AGTGGAGGTCCGTAGTGGTCCTGACATGTAAATCAATTGGTCATCCGACCTGGGCATAGG 663309 Query 679 GGC 681 ||| Sbjct 663308 GGC 663306 >seq1 Length=17862339 Score = 87.8 bits (96), Expect = 7e-15 Identities = 85/108 (79%), Gaps = 1/108 (1%) Strand=Plus/Plus Query 573 CCGAAAGATGGTGAACTATGCCTGAATAGGGTGAA-GCCAGAGGAAACTCTGGTGGAGGC 631 || ||||||||||||| |||| ||| |||| || ||||||||| ||||||||||||| Sbjct 14797820 CCCAAAGATGGTGAACCATGCATGAGCAGGGCCAAAGCCAGAGGACACTCTGGTGGAGGT 14797879 Query 632 TCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGG 679 | || ||| ||| |||||||||| ||| || | ||||||| ||| Sbjct 14797880 CTGTAGTGGTCCTGTCGTGCAAATCCATCATCCGACCTGGGTATGGGG 14797927 >seq10439 Length=6241567 Score = 84.2 bits (92), Expect = 9e-14 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||| |||||||||||||||||| | || || |||||| | | ||| | ||||||| Sbjct 1143076 GAGTCAGGTTGTTTGGGAATGCAGCCCAAAGCAGGTGGTAAACTCCATCTCAGGCTAAAT 1143017 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | || |||||||||| ||||||| || | |||| ||||||| |||||| | Sbjct 1143016 ACCTGCACAAGACCGATAGTCAACAAGTACCGTAAGGCAAAGTTGAAAAGAACTTTGAAG 1142957 Query 160 AGAGAG 165 |||||| Sbjct 1142956 AGAGAG 1142951 >seq8020 Length=11761510 Score = 82.4 bits (90), Expect = 3e-13 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 573 CCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCT 632 || ||||| ||| |||||||||||| | || |||||||||||||| |||||| ||| Sbjct 9833338 CCAAAAGAGGGTTAACTATGCCTGAGCAAGGCAAAGCCAGAGGAAACCCTGGTGCAGGTC 9833397 Query 633 CGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGG 680 || | ||| ||| || || ||| || ||| || |||||||||||| Sbjct 9833398 CGTAACGGACCTGATGTTCACATCAATTGTCTGATCTGGGTATAGGGG 9833445 >seq6244 Length=9589894 Score = 82.4 bits (90), Expect = 3e-13 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 41 AGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATA 100 |||| |||| ||||||||||||| | || ||| |||||| | | ||||| |||||||| Sbjct 4428321 AGTCAGGTTGCTTGGGAATGCAGCCCAAAGTGGATGGTAAACTCCATCTAAGGCTAAATA 4428262 Query 101 TTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAA 160 | | ||||| || || ||||||| | | ||||| ||||||| |||||| | | Sbjct 4428261 CCGACAGGAGACTGAAAGTCAACAAGTACCTTAAGGGAAAGCTGAAAAGAACTTTGAAGA 4428202 Query 161 GAGAG 165 ||||| Sbjct 4428201 GAGAG 4428197 >seq1330 Length=15679484 Score = 80.6 bits (88), Expect = 1e-12 Identities = 94/125 (75%), Gaps = 3/125 (2%) Strand=Plus/Plus Query 42 GTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATAT 101 |||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||||| Sbjct 14458257 GTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAATAT 14458316 Query 102 TGGCCAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTG--GA 158 || |||||| |||| ||||||| | | ||||| ||||||| ||| || || Sbjct 14458317 CAGCGGGAGACCCATAGTCAACAAGTACCATAAAGGGAAAGTTGAAAAGAACTCTGAAGA 14458376 Query 159 AAGAG 163 ||||| Sbjct 14458377 AAGAG 14458381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079379623100