Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq12356 241 2e-61 seq15008 214 3e-53 seq14637 158 2e-36 seq15983 156 7e-36 seq2873 134 2e-29 seq20461 129 9e-28 seq18063 123 4e-26 seq8020 118 2e-24 >seq12356 Length=13565125 Score = 241 bits (266), Expect = 2e-61 Identities = 208/251 (83%), Gaps = 10/251 (4%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| || |||||||||||||||||||||||||||||| | Sbjct 905862 GTCAGTGTAGCGCGCGTGCAGCCCGGA-CATCTAAGGGCATCACAGACCTGTTATTGC-T 905919 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130 ||| || | |||||| | |||| | |||||||||||||| | | || ||| | Sbjct 905920 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCT 905978 Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | | | | ||| |||||| | | ||||||||||||||||||||||||||||| Sbjct 905979 CGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGAC 906038 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 906039 AAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCT 906098 Query 248 ATCAATCTGTC 258 ||||||||||| Sbjct 906099 ATCAATCTGTC 906109 >seq15008 Length=476845 Score = 214 bits (236), Expect = 3e-53 Identities = 201/252 (80%), Gaps = 17/252 (7%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 427689 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 427631 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCA---CCAACCATA 131 ||| || | |||||| | |||| | |||||||||||||| | || || | Sbjct 427630 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGATGCCGAC--TG 427574 Query 132 GTCGATGGGG--------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACC 183 ||| |||| ||| ||| || | | |||||||||||||| |||||||||| Sbjct 427573 CTCG--GGGGTCTCATAACTAGTTAACATGCCAGAGTCTCGTTCGTTATTGGAATTAACC 427516 Query 184 AGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAG 243 ||||||||| ||| ||||||||||||| |||||||| |||||||||| ||||| |||||| Sbjct 427515 AGACAAATCGCTCTACCAACTAAGAACAGCCATGCATCACCACCCATGGAATCGAGAAAG 427456 Query 244 AGCTATCAATCT 255 |||||||||||| Sbjct 427455 AGCTATCAATCT 427444 >seq14637 Length=10531588 Score = 158 bits (174), Expect = 2e-36 Identities = 105/117 (90%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | |||| |||| ||||| |||||||||||||||||| |||||||| Sbjct 5974385 CTAGTTAGCATGCCAGAGTCTGGTTCATTATCAGAATTAACCAGACAAATCGCTCCACCA 5974444 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 5974445 ACTAAGAACGGCCATGCACCACCACCCACGGAATCAAGAAAGAGCTATCAATCTGTC 5974501 >seq15983 Length=2246441 Score = 156 bits (172), Expect = 7e-36 Identities = 186/248 (75%), Gaps = 11/248 (4%) Strand=Plus/Plus Query 19 GTGTAGCGCGCGTGCGGC-CCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 77 |||||| | || ||| || ||||| || ||||||||||||||| ||||||||||| | | Sbjct 201740 GTGTAGTGTGCATGCAGCTCCAGA-CACCTAAGGGCATCACAGGCCTGTTATTGCTTGAT 201798 Query 78 ACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCA---CCAAC----CAT 130 || | || | |||| | ||||||||||||||| | | || || || Sbjct 201799 C--TCAGGTCAGTGAATGCCACTTGTCCCTCTAAGAAGCTGGAGAACGCCGACTGCTCAG 201856 Query 131 AGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAA 190 | ||| ||| |||||| || | ||||| ||| ||||| |||||||||||| | | Sbjct 201857 GGATCATGTAACTAGTTAGCATGTCAGAGTCTCATTCCTTATCAGAATTAACCAGAGAGA 201916 Query 191 TCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATC 250 | |||||||| |||||||| ||||| |||||||||||||||||| |||||||||| || Sbjct 201917 TTGCTCCACCAGCTAAGAACAACCATGTACCACCACCCATAGAATCGAGAAAGAGCTGTC 201976 Query 251 AATCTGTC 258 |||||||| Sbjct 201977 AATCTGTC 201984 >seq2873 Length=23613886 Score = 134 bits (148), Expect = 2e-29 Identities = 100/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | ||||| || ||||| ||||||||||||||||| |||||||| Sbjct 20546191 CTAGTTAGCATTTCAGAGTCTCATTTATTATCAGAATTAACCAGACAAATTGCTCCACCA 20546250 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||| ||||||||||||||||||| |||||||||||||||||| ||||||| Sbjct 20546251 ACTAAGAATGGCCATGCACCACCACCCACCTAATCAAGAAAGAGCTATCGATCTGTC 20546307 >seq20461 Length=4912966 Score = 129 bits (142), Expect = 9e-28 Identities = 101/120 (84%), Gaps = 3/120 (3%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | ||||| || |||||| ||||||||||||||||||||||||||| Sbjct 63758 CTAGTTAGCATGCCAGAGTCTCATTTGTTATCAGAATTAACCAGACAAATCACTCCACCA 63817 Query 202 ACTAAGAACGGCCATG---CACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 || ||||| ||||||| ||||||||||| | ||||| ||||| ||||||||||| ||| Sbjct 63818 ACCAAGAAGGGCCATGTACCACCACCACCCGTGGAATCGAGAAAAAGCTATCAATCAGTC 63877 >seq18063 Length=4859903 Score = 123 bits (136), Expect = 4e-26 Identities = 158/212 (75%), Gaps = 12/212 (6%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||| |||| | | ||| |||| | ||||||||||| |||||||||||||||||| || Sbjct 749584 GTCAGTATAGCACACATGCAGCCCTGGACATCTAAGGGTATCACAGACCTGTTATTG-CT 749642 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCA--CCAA-----C 127 ||| ||| |||||||| |||| | |||||||| |||| | | | | | Sbjct 749643 CAATCTT-GGGTGGCTGGATGCCACTTTTCCCTCTA--AAGCTGGGGATGCTGATTGCTC 749699 Query 128 CATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 |||| || ||| |||||| | | |||||||| |||| | ||| |||||||| Sbjct 749700 AGGGGTCG-TGTAACTAGTTAGCATGCCAGAGTCTCGTTTGTTAACAGAAGTAACCAGAT 749758 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCA 219 |||| ||||||||||||||||| ||||||||| Sbjct 749759 AAATTACTCCACCAACTAAGAATGGCCATGCA 749790 >seq8020 Length=11761510 Score = 118 bits (130), Expect = 2e-24 Identities = 181/253 (72%), Gaps = 9/253 (4%) Strand=Plus/Minus Query 13 CCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 72 |||||| ||| || | |||| |||| ||| ||||| ||||| |||| |||||| | Sbjct 11477823 CCGTCATTGTGGCATGTGTGCAGCCCCAGACACCTAAGAGCATCTCAGAACTGTTACTAG 11477764 Query 73 CTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCC---AGCCACCAACCA 129 |||| || | |||||| | |||| | |||||| |||||| | || ||| ||| | Sbjct 11477763 -TCAATCTGA-AGTGGCTGAATGCCACTTGTCCCTATAAGAAACTGAGAGACACTAACGA 11477706 Query 130 -TAGTCGATGGGGCTAT---TTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAG 185 | | ||| | | |||||| | | |||| |||| ||||| ||||||||||| Sbjct 11477705 CTTGGGGATTGCAAAACACATTAGCATGCCAGAGTCTTGTTCTTTATCAGAATTAACCAG 11477646 Query 186 ACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAG 245 |||||||||| |||||||| || |||| | || || | | || |||| |||||||| Sbjct 11477645 GCAAATCACTCAGCCAACTAACAAGGGCCCTTCATCAACTCTCACAGAAGTGAGAAAGAG 11477586 Query 246 CTATCAATCTGTC 258 |||||||||||| Sbjct 11477585 TTATCAATCTGTC 11477573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796576751082