Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq26104 347 2e-93 seq21079 262 7e-68 seq15983 255 1e-65 seq20192 91.5 3e-16 seq20363 84.2 4e-14 seq17561 73.4 7e-11 >seq26104 Length=1476315 Score = 347 bits (384), Expect = 2e-93 Identities = 254/294 (86%), Gaps = 1/294 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||||||||||| Sbjct 776812 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 776871 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 776872 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 776931 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 776932 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 776991 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 776992 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 777051 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | || | |||||||| ||||| | |||||| ||| ||||||| Sbjct 777052 TAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTC 777105 >seq21079 Length=10355161 Score = 262 bits (290), Expect = 7e-68 Identities = 163/175 (93%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 4235663 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 4235722 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 4235723 TTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGA 4235782 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGT 205 | |||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct 4235783 CGCCGAAGGATCAAAAAGCAACGTCGCTATGAATGCTTGGCCACCACAAGCCAGT 4235837 >seq15983 Length=2246441 Score = 255 bits (282), Expect = 1e-65 Identities = 200/238 (84%), Gaps = 1/238 (0%) Strand=Plus/Minus Query 57 CTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTA 116 |||||||| |||||| |||||||||||||||||||||||||| ||||||||||| |||| Sbjct 196660 CTCATGACAGTCTAATCCCAGCTCACGTTCCCTATTAGTGGGAGAACAATCCAATGCTTG 196601 Query 117 CCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCG 176 |||||||||||| |||||||||||||||| ||||||||| ||||||||| | |||| Sbjct 196600 GTGAATTCTGCTTCAC-ATGATAGGAAGAGCCGGCATCGAAGGCTCAAAAAGCGATGTCG 196542 Query 177 CTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTA 236 |||||||| |||||| ||| ||||| ||||||||||||||||||||||||| |||||| Sbjct 196541 CTATGAACACTTGGCCGCCGCAAGCTAGTTATCCCTGTGGTAACTTTTCTGACACCTCCT 196482 Query 237 GCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 || | ||| | || | |||||||| ||||| |||||||||| |||||||| Sbjct 196481 GCTTAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCTGCTTTCATGGTCTGTATTCA 196424 >seq20192 Length=10122177 Score = 91.5 bits (100), Expect = 3e-16 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 138 TAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCAC 197 ||||||||||||||||| ||| |||||||||||| || ||||||||| |||||| |||| Sbjct 2862503 TAGGAAGAGCCGACATCAAAGCATCAAAAAGCAAGGTTGCTATGAACACTTGGCCACCAC 2862562 Query 198 AAGCCAGT 205 |||||||| Sbjct 2862563 AAGCCAGT 2862570 >seq20363 Length=1259947 Score = 84.2 bits (92), Expect = 4e-14 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 || ||||||||| ||||||||||||||| ||| |||||||||| || | |||| ||| Sbjct 1175467 GAGTTCTGCTTCACAATGATAGGAAGAGCCAACACTGAAGGATCAACAATCCACGTGGCT 1175526 Query 179 ATGAACGCTTGGCTGCCACAAGCC 202 ||||| |||||| | |||||||| Sbjct 1175527 ATGAAATCTTGGCCGACACAAGCC 1175550 >seq17561 Length=12499708 Score = 73.4 bits (80), Expect = 7e-11 Identities = 46/50 (92%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTC 80 |||| ||||||||||||||||||||||| ||||||||||||||||||| Sbjct 5622226 TCATTAGTAGGGTAAAACTAACCTGTCTTGCGACGGTCTAAACCCAGCTC 5622177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854152890432