Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq15008 197 3e-48 seq12356 116 7e-24 seq17755 93.3 8e-17 seq15983 84.2 4e-14 seq18063 75.2 2e-11 >seq15008 Length=476845 Score = 197 bits (218), Expect = 3e-48 Identities = 201/258 (78%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 427591 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 427648 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || || || | | Sbjct 427649 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 427708 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||| |||||| | | || | | ||||| ||||||| | | |||| Sbjct 427709 CCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 427768 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| ||||| ||| ||||||||| Sbjct 427769 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATT 427828 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 427829 AAGTCCCTGCCCTTTGTA 427846 >seq12356 Length=13565125 Score = 116 bits (128), Expect = 7e-24 Identities = 150/202 (74%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 905959 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 905902 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || | || | | Sbjct 905901 ATGCCCTTAGATGTCC-GGGCTGCACGCGCGCTACACTGACTGGCTCAGTGTGTGCCTAC 905843 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| || || ||| |||||| | | || | | ||||| ||||||| | | |||| Sbjct 905842 CCTACGCTGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 905783 Query 251 CAATTATTGCTCTTCAACGAGG 272 |||||||| | | | ||| ||| Sbjct 905782 CAATTATTCCCCATGAACAAGG 905761 >seq17755 Length=25620257 Score = 93.3 bits (102), Expect = 8e-17 Identities = 129/178 (72%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 132 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCAC 191 ||||||||||||| | |||| ||||||| ||||||||||| | || || || | | | Sbjct 22838637 TGCCCTTAGATGTCCGGGGCTGCACGCGGGCTACACTGACTGGCTCAGCGTGTGCCTACC 22838696 Query 192 CTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGT-CGTGCTGGGGATAGAGCATTG 250 | || | |||| ||||| | || ||| || | |||| ||||||| | | |||| Sbjct 22838697 CCACACCAGCAGGTGCAGGTAACCCC-TTGAACCCTATTCGTGATGGGGATCGGGGATTG 22838755 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 |||||||| | | | || || |||| || ||||| ||| ||||| ||| ||||||| Sbjct 22838756 CAATTATTCCCCATGAATGAAGAATTCCCAGTAAATGCGGGTCATAAGCTTGCGTTGA 22838813 >seq15983 Length=2246441 Score = 84.2 bits (92), Expect = 4e-14 Identities = 185/268 (69%), Gaps = 17/268 (6%) Strand=Plus/Minus Query 65 TCGCCGGCTTCTTAGAGGGACTATCGGC--TCAAGCCGATGGAAGTTTGAGGCAATAACA 122 || || ||||||||||||||| | ||| ||| | || || | || |||||||| Sbjct 201841 TCTCCAGCTTCTTAGAGGGACAAGTGGCATTCA--CTGACCTGAGATCAAG-CAATAACA 201785 Query 123 GGTCTGTGATGCCCTTAGATGTTCTGG-GCCGCACGCGCGCTACACTGACAGAGCCAACG 181 || ||||||||||||||| || ||||| || ||| || | |||||| || || | | Sbjct 201784 GGCCTGTGATGCCCTTAGGTG-TCTGGAGCTGCATGCACACTACACCAACTGACTCGGTG 201726 Query 182 AGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT-CTGTCGTGCTGGGGA 240 || | | || ||| | |||| ||||| | |||| |||| | ||||| |||||| Sbjct 201725 TGTGCCTACCCGATGCCAGCAGGTGCTGGTAAAC-TGTTGAACTCCATTCGTGATGGGGA 201667 Query 241 TAGA-------GCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTC 293 | || | |||||||||||| | | | | |||| ||| || |||||| || ||| Sbjct 201666 TTGAGGATTGGGGATTGCAATTATTCCCCATGACCGAGAAATTCCCAGTAAGTGCTGGTC 201607 Query 294 ATCAGCACGCGTTGA-TTACGTCCCTGC 320 || | | || ||| ||| ||| |||| Sbjct 201606 ATAAACTTGCACTGATTTAAGTCTCTGC 201579 >seq18063 Length=4859903 Score = 75.2 bits (82), Expect = 2e-11 Identities = 77/97 (79%), Gaps = 3/97 (3%) Strand=Plus/Minus Query 76 TTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGC 134 ||||||||| | ||| || |||| | ||| ||||| |||||||||||||||||| | Sbjct 749678 TTAGAGGGAAAAGTGGCATCCAGCC-ACCCAAGATTGAG-CAATAACAGGTCTGTGATAC 749621 Query 135 CCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAC 171 |||||||||| | |||| ||| | | |||| |||||| Sbjct 749620 CCTTAGATGTCCAGGGCTGCATGTGTGCTATACTGAC 749584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946926050816