Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq15008 381 2e-103 seq13271 150 5e-34 seq21650 122 3e-25 seq21991 93.3 1e-16 >seq15008 Length=476845 Score = 381 bits (422), Expect = 2e-103 Identities = 421/557 (76%), Gaps = 59/557 (11%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||||| Sbjct 426742 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 426683 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 426682 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 426623 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||||||||||||||||| ||||||||| |||||| | |||||||||| Sbjct 426622 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAG 426563 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 || |||||||||||||||||||||||||| || ||||| | |||||| | | Sbjct 426562 GCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCCAC 426503 Query 242 -AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA-------GGAGCCC-CG-- 288 || | |||||| | | ||||| || ||||||| || |||| || Sbjct 426502 GGGGGGCGTGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGCCGCCGGCGCCCGCGCC 426443 Query 289 -----AAGG------------------GCGTTGGTTTTTTATCTAATAAATACA------ 319 ||| | ||||| |||| |||| |||||| || Sbjct 426442 CCAGCCAGGGTCGGGGCGGGACTGACCGGGTTGG-TTTTGATCTGATAAATGCACGCATC 426384 Query 320 CCCCTTCCGAAGTCGGGGT-------TTTTAGCATGTATTAGCTCTAGAATTACCACGGT 372 |||| ||||| ||||| | |||||||||||||||||||||||||| || Sbjct 426383 CCCCCCTCGAAG--GGGGTCAGCGCCCGTCGGCATGTATTAGCTCTAGAATTACCACAGT 426326 Query 373 TATCCATGTAGTA-AG----GTACTATCAAATAAACGATAACTGATTTAATGAGCCATTC 427 |||||| |||| | || | | | |||| ||| ||||||||||||||||||||||| Sbjct 426325 TATCCAAGTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGAGCCATTC 426266 Query 428 GCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAG 487 |||||||||||||| | | ||||||||||||||||||||||||||||||||||| Sbjct 426265 GCAGTTTCACTGTACCGGCCGTGCGTACTTAGACATGCATGGCTTAATCTTTGAGACAAG 426206 Query 488 CATATGACTACTGGCAG 504 |||||| |||||||||| Sbjct 426205 CATATG-CTACTGGCAG 426190 >seq13271 Length=7023470 Score = 150 bits (166), Expect = 5e-34 Identities = 147/187 (79%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 40 CAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCT 99 || ||||| |||||||||| ||| | | |||| |||||||||||| || |||||||| Sbjct 3090914 CATTATTTTTTGTCACTACTTCCTGATTT-GGGAGTGGGTAATTTGCATGCTTGCTGCCT 3090856 Query 100 TCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCG 159 |||||||||||||||||| || ||||||||| | |||| ||||| |||||| ||| || | Sbjct 3090855 TCCTTGGATGTGGTAGCCATTCCTCAGGCTCTCACTCCTGAATCAAACCCTCATT-CCTG 3090797 Query 160 TTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAAT 219 | |||| | | |||||||||||| || |||| |||||||||| || ||| | Sbjct 3090796 TCACCCATGGTCACCATGGTAGGCAGAGTGACTGTCATCAAAAGTTGATATGGTAGACCT 3090737 Query 220 TTGAATG 226 ||||||| Sbjct 3090736 TTGAATG 3090730 >seq21650 Length=15034901 Score = 122 bits (134), Expect = 3e-25 Identities = 96/112 (86%), Gaps = 5/112 (4%) Strand=Plus/Plus Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAG--ATTGCTTA 452 |||| ||| |||||||||||||||||||||| |||||||||||||| | ||| Sbjct 13506089 CAAAGGAACCATAACTGATTTAATGAGCCATTTGCAGTTTCACTGTACTGGCCATGC--G 13506146 Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||| ||||||||||||||||||||| |||| |||||||||| Sbjct 13506147 TACTTAGACATGCAGGGCTTAATCTTTGAGACAAGCGTATG-CTACTGGCAG 13506197 >seq21991 Length=8941059 Score = 93.3 bits (102), Expect = 1e-16 Identities = 117/155 (75%), Gaps = 13/155 (8%) Strand=Plus/Minus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA---GTAAGGT-ACT-ATCAA 397 ||||||||| |||||||||| |||||| | |||| || | | || || | | | ||| Sbjct 8866796 AGCATGTATCAGCTCTAGAACTACCACAGACATCCCTGAAAGAGAAAAGTGAGTGACCAA 8866737 Query 398 ATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA---TAGAT-TGCTTAT 453 | | | |||| ||||||||||||||||| ||||||||||||| || ||| Sbjct 8866736 AGGATCCATAAATGATTTAATGAGCCATTTACAGTTTCACTGTACCCGCCATGTGC---- 8866681 Query 454 ACTTAGACATGCATGGCTTAATCTTTGAGACAAGC 488 || |||||||||||||||||||| || ||||||| Sbjct 8866680 ACCTAGACATGCATGGCTTAATCCTTCTGACAAGC 8866646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509963162112