Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq12132 224 8e-54 seq22719 176 4e-39 seq23499 168 5e-37 seq18140 98.7 8e-16 seq27380 82.4 6e-11 seq17644 82.4 6e-11 >seq12132 Length=2475592 Score = 224 bits (248), Expect = 8e-54 Identities = 607/915 (66%), Gaps = 23/915 (3%) Strand=Plus/Plus Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084 |||| || || || ||| || || || || || || | |||||| ||||||| | | Sbjct 56390 ATGAGCCGCTGCTGAGAGAAAACCCGCGCCGCTTTGTCATTTTCCCCGTCGAGTACCACG 56449 Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATT 61144 ||| |||| |||||| || |||||||| || ||||||||||| | |||||||| || Sbjct 56450 GTATCTGGCACATGTATAAGAAGGCGGAGGCCTCCTTCTGGACCGCCGAGGAGGTGGAGC 56509 Query 61145 TGTCCAAAGACATGAATGACTGGGAG--CGTTTATCGAGCGGTGAACAACATTTCATTAA 61202 ||||||| ||||| ||||||| | | | | | || || || || || Sbjct 56510 TGTCCAAGGACATTTGGCACTGGGAATCCCTGAAGCCCGAGGAGAGATACTTTATATCCC 56569 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 || || |||| || ||||| || || | || || ||||| || || |||| || Sbjct 56570 AC--GTTCTGGCTTTATTTGCAGCAAGTGATGACATAGTAAATGAAAACTTGGTGGAGCG 56627 Query 61263 TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCAT 61322 || || || || || | | || || || |||||||| || ||||| |||||||| Sbjct 56628 ATTTAACCAAGAAGTTCAGATTACAGAAGCCCGCTGTTTCTATGGTTTCCAAATTGCCAT 56687 Query 61323 GGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGC 61382 ||| || | || || || ||||| ||| | || || || || ||||| | || | Sbjct 56688 GGAAAACATACATTCTGAAATGTATAGTCTCCTTATTGACACTTACATAAAAGATCCCAA 56747 Query 61383 GGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGA 61442 ||| | ||| | ||||||||||| || ||||| || || || ||| | || Sbjct 56748 CGAAAGGGAATTTCTCTTCAATGCCATTGAAACGATGCCTTGTGTCAA---GAAGTCAGA 56804 Query 61443 TTGGGCCTTCAATTGGATCACCAGTACAA--CGGCTACATTTGGTGAACGATTGCTGGCA 61500 ||||||||| ||||| | |||| |||||| | ||||||||| | | || Sbjct 56805 TTGGGCCTTGCGCTGGAT--TGGGGACAAACAGGCTACCTATGGTGAACGCGCG-TAGCC 56861 Query 61501 TTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAG 61560 ||||| | || || || | || || ||| || ||||| | || || ||| | ||| Sbjct 56862 TTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCCATATTCTGGCTCAAG 56921 Query 61561 AAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATG-AGTTGATATCACGCGACGAGGG 61619 ||||| ||||| ||||| || || || || |||| | || || || | || ||||| Sbjct 56922 AAACGAGGACTGATGCCTGGCCTCACATTTTCTAATGAACTTATTAGCA-GAGATGAGGG 56980 Query 61620 CATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGA 61679 | || |||||||||||| || | ||||||| | || || | || || || Sbjct 56981 TTTACACTGTGATTTTGCTTGCCTGATGTTCAAAC---ACCTAGTACACAAACCATCAGA 57037 Query 61680 GGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGA 61739 |||| | || | || || || | || || || |||||||| || || ||||| Sbjct 57038 GGAGAGAGTATGCGAAATAATTATCAATGCTGTTCGGATAGAACAGGAGTTCCTCACTGA 57097 Query 61740 CGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATT 61799 |||||||| || ||||| || ||||| || |||||| ||| || ||||| || Sbjct 57098 GGCTTTGCCTGTGAAGCTCATTGGGATGAACTGCACTCTAATGAAGCAATACATTGAGTT 57157 Query 61800 TGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGC--GGATCT-ATAATACGAAAAA 61856 ||| || | | | || || | || ||||| | ||| || | | | | || | || Sbjct 57158 TGTGGCAGGCAGACTTATGCTGGAACTGGGT-TTTAGCAAGGTTTTCAGAGTA--GAGAA 57214 Query 61857 CCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACG 61916 |||||||| || ||||| | ||||| ||||| || |||| || || || ||||| | Sbjct 57215 TCCATTTGACTTTATGGAGAATATTTCACTGGAAGGATAGACTAACTTCTTTGAGAAGAG 57274 Query 61917 TGTAGGCGACTATCA 61931 |||||||| ||||| Sbjct 57275 AGTAGGCGAGTATCA 57289 >seq22719 Length=8987742 Score = 176 bits (194), Expect = 4e-39 Identities = 586/900 (65%), Gaps = 35/900 (4%) Strand=Plus/Plus Query 61041 AGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTA 61100 ||| || || ||| | || || | |||||||||||||| | |||| |||| ||||| Sbjct 8554418 AGAAAACCCGCGTGGCTTTGTCATTTTCCCCATCGAGTACCACAATATCTGGCAGATGTA 8554477 Query 61101 CAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAA 61160 || |||||||| || ||||||||||| | |||||||| || ||| ||| ||||| Sbjct 8554478 TAAGAAGGCGGAGGCCTCCTTCTGGACCGCCGAGGAGGTGGACCTGTTCAAGGACATTCG 8554537 Query 61161 TGACTGGGAG--CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTC 61218 ||||||| | | | | || || || || || || || |||| ||| Sbjct 8554538 GCACTGGGAATCCCTGAAGCCCAAGGAGAGATACTTTATATCCCAC--GTTCTGGCTTTC 8554595 Query 61219 TTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG-TTTCGCGCAGGAGGT 61277 ||||| || || | || || ||||| || || |||| | ||| || || || || Sbjct 8554596 TTTGCAGCAAGTGATGACATAGTAAATGAAAACTTGGTGGAGCAATTTAGC-CAAGAAGT 8554654 Query 61278 GCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTC 61337 || | | || | || |||| ||||||||||| || | || || Sbjct 8554655 TCAGATTACAGAAACCCGCTGTT--------------ATTGCCATGGAAAACATACATTC 8554700 Query 61338 GGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATT 61397 || ||||| ||| | || || || || | ||| | || | ||| | ||| | Sbjct 8554701 TGAAATGTATAGTTTCCTTATTGACACTTGCATAAAAGATCCCAACGAAAGGGAATTTCT 8554760 Query 61398 GTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTG 61457 ||||||||||| || ||||| || || || ||| || ||||||||||| || Sbjct 8554761 TTTCAATGCCATTGAAACGATGCCTTGTGTCCAGAAGAAGGCAGATTGGGCCTTGCGCTG 8554820 Query 61458 GATCACCAGTACAACG--GCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAG 61515 ||| | |||| | ||||| | ||||||||| | | || ||||| | || || Sbjct 8554821 GATTGG--GGACAAAGAGGCTACCTATGGTGAACGCGTTGTAGCCTTTGCTGCAGTGGAA 8554878 Query 61516 GGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATG 61575 || | || || ||| || ||||| | || || ||| | |||||||| ||||| ||| Sbjct 8554879 GGCATCTTCTTTTCTGGTTCTTTTGCATCCATATTCTGGCTCAAGAAACGAGGACTGATG 8554938 Query 61576 CCCGGTCTGACCTTCAGCAATGAGTTGAT-ATCACGCGACGAGGGCATGCATTGTGATTT 61634 || || || || || ||||| | || | || | || ||||| | || |||||||| Sbjct 8554939 CCTGGCCTCACATTTTCTAATGAACTTATTAGCA-GAGATGAGGGTTTACACTGTGATTT 8554997 Query 61635 TGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGA 61694 |||| || | ||||||| | | || | || || |||||| | || | || Sbjct 8554998 TGCTTGCCTGATGTTCAAAC---ACATAGTACACAAACCATCAGAGGAGAGAGTAAGAGA 8555054 Query 61695 GATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTC 61754 || || | || || || |||||||| || || ||||| || ||||| || Sbjct 8555055 AATAATTATGAATGCTGTTCGGATAGAACAGGAGTTCCTCACTGAGGCCTTGCCTGTGAA 8555114 Query 61755 ACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCT 61814 ||||| || |||||||| |||||| ||| || ||||| ||||| || ||| | || Sbjct 8555115 GCTCATTGGGATGAATTGCACTCTAATGAAGCAATACATTGAGTTTGTGGCAGACAGACT 8555174 Query 61815 GTTGGTCGATTTGGGTATGAAGC--GGATCT-ATAATACGAAAAACCCATTTGATTTCAT 61871 || | || ||||| | ||| || | | | | || | || ||||||| || || Sbjct 8555175 TATGCTGGAACTGGGT-TTTAGCAAGGTTTTCAGAGTA--GAGAATCCATTTGCCTTTAT 8555231 Query 61872 GGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 ||| | ||||| ||||| || ||||| || || || ||||| | |||||||| ||||| Sbjct 8555232 GGAGAATATTTCACTGGAAGGAAAGACTAACTTCTTTGAGAAGAGAGTAGGCGAGTATCA 8555291 >seq23499 Length=2348749 Score = 168 bits (186), Expect = 5e-37 Identities = 587/900 (65%), Gaps = 22/900 (2%) Strand=Plus/Minus Query 61041 AGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTA 61100 ||| || || || || || || | ||||||| |||||| | | ||| |||| | || Sbjct 2216509 AGAAAACCCGCGCCGCTTTGTCGTTTTCCCCACCGAGTACCACGGTATCTGGCAGGT-TA 2216451 Query 61101 CAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAA 61160 |||||||| || ||||||||||| | |||||||| || ||||| | ||||| Sbjct 2216450 TCTGAAGGCGGAGGCCTCCTTCTGGACCGCCGAGGAGGTGGACCTGTCCGAGGACATTCG 2216391 Query 61161 TGACTGGGAG--CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTC 61218 ||||||| | | | | | || || || || || || || |||| ||| Sbjct 2216390 GCACTGGGAATCCCTGAAGCCCGAGGAGAGAGACTTTATATCCCAC--GTTCTGGCTTTC 2216333 Query 61219 TTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG-TTTCGCGCAGGAGGT 61277 ||||| || | || || || ||||| || || |||| || ||| || || ||||| Sbjct 2216332 TTTGCAGCGAGTAAGGGCATAGTAAATGAAAACTTGGTGGAGCGATTTAGC-CAAGAGGT 2216274 Query 61278 GCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTC 61337 || | | || || || |||||||| || ||||| ||||||| ||| || | || || Sbjct 2216273 TCAGATTACAGAAGCCCGCTGTTTCTATGGATTCCAAATTGCCAGGGAAAACATACATTC 2216214 Query 61338 GGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATT 61397 || ||||| ||| | || || || || ||||| | || | ||| | ||| | Sbjct 2216213 TGAAATGTATAGTCTCCTTATTGACACTTACATAAAAGATCCCAGCGAAAGGGAATTTCT 2216154 Query 61398 GTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTG 61457 ||||||||| | || ||||| || || ||| ||| || || |||||||| | || Sbjct 2216153 CTTCAATGCCGTTGAAACGATGCCTTGTGTCAAGAAGAAGGCAGACTGGGCCTTGCACTG 2216094 Query 61458 GATCACCAGTACAACG--GCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAG 61515 || | |||| | | ||| | ||||||||| | | || ||||| | || || Sbjct 2216093 GACTGG--GGACAAAGAGGTTACCTATGGTGAACGTGTCGTAGCCTTTGCTGCAGTGGAA 2216036 Query 61516 GGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATG 61575 || | || || ||| || ||||| | || || ||| | |||||||| ||||| ||| Sbjct 2216035 GGCATTTTCTTTTCTGGTTCTTTTGCATCCATATTCTGGCTCAAGAAACGAGGACTGATG 2215976 Query 61576 CCCGGTCTGACCTTCAGCAATGAGTTGAT-ATCACGCGACGAGGGCATGCATTGTGATTT 61634 || || || || || ||||| | || | || | || ||||| | || |||||||| Sbjct 2215975 CCTGGCCTCACATTTTCTAATGAACTTATTAGCA-GAGATGAGGGTTTACACTGTGATTT 2215917 Query 61635 TGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGA 61694 |||| || | ||||||| | | || | || || |||||| | || | || Sbjct 2215916 TGCTTGCCTGATGTTCAAAC---ACCCAGTACACAAACCATCAGAGGAGAGGGTAAGAGA 2215860 Query 61695 GATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTC 61754 || || | || || | || ||||| || || ||||| || ||||| || Sbjct 2215859 AATAATTATCAATGCTGTTCGGTTAGAGCAGGAGTTCCTCACTGAGGCCTTGCCTGTGAA 2215800 Query 61755 ACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCT 61814 |||| || ||||| || |||||| ||| | |||| ||||| || ||| | || Sbjct 2215799 GCTCACTGGGATGAACTGCACTCTAATGAAGCAACACATTGGGTTTGTGGCAGACAGACT 2215740 Query 61815 GTTGGTCGATTTGGGTATGAAGC--GGATCT-ATAATACGAAAAACCCATTTGATTTCAT 61871 || | || ||||| | ||| || | | | | || | || |||||||| || || Sbjct 2215739 TATGCTGGAACTGGGT-TTTAGCAAGGTTTTCAGAGTA--GAGAATCCATTTGACTTTAT 2215683 Query 61872 GGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 ||| | ||||| ||||| || ||||| || || || |||| | ||||| || ||||| Sbjct 2215682 GGAGAATATTTCACTGGAAGGAAAGACTAACTTCTTTGAGACGAGAGTAGGTGAGTATCA 2215623 >seq18140 Length=5205659 Score = 98.7 bits (108), Expect = 8e-16 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| || | ||||| || |||||||| ||||| || ||| ||| |||||| Sbjct 744802 CAGGAGGTGCAGGTTCCAGAGGCTCGCTGTTTCTATGGCTTTCAAATTCTCATCGAGAAT 744861 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 || ||||| |||||||||||| | || || || || |||||||| || Sbjct 744862 GTTCACTCAGAGATGTACAGTTTGCTAATAGACACTTACATCAGAGA 744908 >seq27380 Length=10165399 Score = 82.4 bits (90), Expect = 6e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084 |||| || || || ||| || || || || || || | |||||||||||||| | | Sbjct 7670004 ATGAGCCGCTGCTGAGAGAAAACCCGCGCCGCTTTGTCATTTTCCCCATCGAGTACCACG 7669945 Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 |||| |||| ||||| || |||||||| || ||||||||||| | |||||||| Sbjct 7669944 ATATCTGGCAGATGTATAAGAAGGCGGAGGCCTCCTTCTGGACCGCCGAGGAGGT 7669890 >seq17644 Length=22291198 Score = 82.4 bits (90), Expect = 6e-11 Identities = 117/165 (71%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 65689 TCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAA 65748 ||| | |||||||||||| | |||||||| || || || | ||||||| || ||||| Sbjct 3016570 TCCATGCTCCTTGGCAAGGTCACAGCTGGCTTCCAGGGCTCCGTAATAAATAGTTTCGAA 3016511 Query 65749 AATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACCCATCAGGACAAA 65808 || | ||| | | | || || | ||||| | || | |||||||| ||| Sbjct 3016510 GATCTGCTTATTCAATAACTGGGCTTCTGCACTCTCAAAAGGGTATCTCATCAGGATAAA 3016451 Query 65809 AGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACG 65853 || || ||||||||||| || ||||| || ||||| |||||||| Sbjct 3016450 AGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGACG 3016406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397427862498080