Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq1 129 9e-28 seq274 84.2 3e-14 >seq1 Length=210400635 Score = 129 bits (142), Expect = 9e-28 Identities = 162/217 (75%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61 || |||||| |||||| || ||||||||||||| ||||| | |||||| |||||| || Sbjct 185503830 TAAAAAGGG-AGGGACTTAATCAACGCGAGCTT-ATGACCTACCCTTACTGGGAATT-CC 185503886 Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA-TGAAATTTCAAAGATTA 120 ||||| | | || ||||||||| |||||||||| || || ||| | | ||| Sbjct 185503887 TCGTTCATGTGGAATAATTGCAATCCCTGATCCCCATCATGAATGGGGTTTAACGGGTTA 185503946 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 |||| |||| ||| ||| | || | ||| |||||||||||||| ||| | Sbjct 185503947 CCCGCGCCTGCTGGCGTAGGGTAGGCACACACTGAGCCAGTCAGTGTAGCGCGCATGCAG 185504006 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 ||| | ||||||||||| ||||||||||||||||||| Sbjct 185504007 CCCCGGACATCTAAGGGTATCACAGACCTGTTATTGC 185504043 >seq274 Length=204313951 Score = 84.2 bits (92), Expect = 3e-14 Identities = 135/184 (73%), Gaps = 10/184 (5%) Strand=Plus/Plus Query 21 GTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATT 80 ||||| || ||||| ||||| ||| ||||| |||||| | ||||| | | || |||| Sbjct 181200687 GTCAATGCAAGCTT-ATGACCCGCATTTACTGGGAATT-CTTCGTTCATGGGGAATAATT 181200744 Query 81 GCAATGATCTATCCCCATCACGATGAA-ATTTCAAAGA-TTACCCGGACCTGTCGGCCAA 138 ||||| | |||||||||||| | ||||||| | ||||| | | ||| ||| || Sbjct 181200745 GCAATCCCCAGTCCCCATCACGAATAGGATTTCAAGGGGTTACCAGCATCTGCCGG--AA 181200802 Query 139 GGTGATAG--ACTCGTTGAATACA-TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAG 195 | | ||| || || ||| | || |||||||||| | ||||| |||| ||||||||| Sbjct 181200803 TGGGGTAGGCACACGCTGA-TCCAGTCAGTGTAGCCCACGTGCAGCCCCAGACATCTAAG 181200861 Query 196 GGCA 199 |||| Sbjct 181200862 GGCA 181200865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751896516575