Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq1644 161 2e-37 seq1195 158 2e-36 seq848 82.4 1e-13 >seq1644 Length=117903854 Score = 161 bits (178), Expect = 2e-37 Identities = 206/278 (74%), Gaps = 7/278 (3%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || ||| | | | |||||||| ||||||||||||||| Sbjct 81800873 ATGCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTT-AAAAAATTAGAGTGT 81800931 Query 98 TCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 |||||||||||| || | |||| ||| ||||||||| ||||||||| |||| Sbjct 81800932 TCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTTGGAATAATGGAATAGGACC-GCGG 81800990 Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214 || |||||||||||||| | || | | |||||||| ||||| | |||||| | Sbjct 81800991 TTTTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTC 81801050 Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||| | |||||||||||||||||| ||||| | | |||||||| Sbjct 81801051 GTATTGCCCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGCCCAGAGCGAAAGCA 81801110 Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || ||||| |||||||||||||||| |||||||||| Sbjct 81801111 TTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 81801147 >seq1195 Length=124281992 Score = 158 bits (174), Expect = 2e-36 Identities = 182/242 (75%), Gaps = 5/242 (2%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC---GAATACATTAGCAT 130 |||||||||||||||||||||||||||||||||| | || | |||| ||| Sbjct 25930018 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGACCGAGCCGCCTGGATACTGCAGCTA 25930077 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 |||||||| ||||||||| ||||||||||||||||||||| | || | | || || Sbjct 25930078 GGAATAATGGAATAGGACC-GCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATCAT 25930136 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| ||||| | |||||| | ||||| | |||||||||||||||||| | Sbjct 25930137 TAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACTGGC 25930196 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| || | |||||||| || ||||| |||||||||||||||| |||||||| Sbjct 25930197 GCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAA 25930255 Query 311 GT 312 || Sbjct 25930256 GT 25930257 >seq848 Length=158406734 Score = 82.4 bits (90), Expect = 1e-13 Identities = 80/101 (79%), Gaps = 4/101 (4%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTG---CTCGAATACATTAGCAT 130 |||||||||||||||||||||||||||||||||||| | | | |||| || Sbjct 69545153 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCAAGCCACCTGGATACCACAGTTA 69545094 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTT 171 |||||||| ||||||||| | |||||||||||| ||||| Sbjct 69545093 GGAATAATGGAATAGGAC-CACAGTTCTATTTTGTGGGTTT 69545054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915069995840