Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1556 111 7e-22 seq1882 109 2e-21 seq2078 96.9 1e-17 seq699 95.1 5e-17 seq1195 87.8 7e-15 seq848 84.2 9e-14 seq1820 78.8 4e-12 seq435 77.0 1e-11 >seq1556 Length=121768101 Score = 111 bits (122), Expect = 7e-22 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| || | ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 98519494 GAGTCGGGTCGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 98519435 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | |||| ||||||||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 98519434 ACTGGCATGAGACCGATAGTCAACAAGTATTGTAAGGGAAAGTTGAAAAGAACTTTGAAG 98519375 Query 160 AGAGAGTTAAAAAG 173 |||||||| || || Sbjct 98519374 AGAGAGTTGAAGAG 98519361 >seq1882 Length=96796970 Score = 109 bits (120), Expect = 2e-21 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 576 AAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGC 635 ||||||||||||||||||||| |||||||||||||||||||| |||| |||||| || Sbjct 53072489 AAAGATGGTGAACTATGCCTGGGTAGGGTGAAGCCAGAGGAAATTCTGATGGAGGTCCGT 53072430 Query 636 AGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || ||| ||| |||||||| | | ||| | ||||||||||| ||| Sbjct 53072429 AGTGGTCCTGATGTGCAAATTGGTTGTCTGACCTGGGTATAGGGACGA 53072382 Score = 89.7 bits (98), Expect = 2e-15 Identities = 83/104 (80%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 573 CCGAAAGATGGTGAACTATGCCTGAATAGGGTGAA-GCCAGAGGAAACTCTGGTGGAGGC 631 || |||||||||||||||||||||| |||| || ||||||||| |||||||||| || Sbjct 8777029 CCCAAAGATGGTGAACTATGCCTGAGCAGGGCCAAAGCCAGAGGACACTCTGGTGGGGGT 8776970 Query 632 TCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTAT 675 | |||||| ||| ||||||||| ||| || | ||||||| Sbjct 8776969 CCATAGCGGTCCTGTTGTGCAAATCCATCATCTGACCTGGGTAT 8776926 Score = 75.2 bits (82), Expect = 5e-11 Identities = 102/139 (73%), Gaps = 5/139 (4%) Strand=Plus/Minus Query 41 AGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATA 100 ||||| |||| ||||||||||||| | || ||| |||||| | ||||| |||||||| Sbjct 51117170 AGTCGGGTTGCTTGGGAATGCAGC-CCAAGCGGGTGGTAAACCCCATCTAAGGCTAAATA 51117112 Query 101 TTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTG--GA 158 || |||| ||||| || |||| || | | ||| ||||||| |||||| || Sbjct 51117111 CCTGCAGCAGACGGATAGTCAACGAGTACCGTAAGGGTAAGTTGAAAAGAACTTTGAAGA 51117052 Query 159 A--AGAGAGTTAAAAAGCA 175 | |||||| |||||||| Sbjct 51117051 AAGAGAGAGAGAAAAAGCA 51117033 >seq2078 Length=44557958 Score = 96.9 bits (106), Expect = 1e-17 Identities = 82/99 (83%), Gaps = 3/99 (3%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAAT-AGGGTGAAGCCAGAGGAAACTCT 622 |||||||||| |||||||||||| ||||||||| | |||||||||||||||||| ||| Sbjct 974862 TGTTGGGACCTGAAAGATGGTGACCTATGCCTGGGTCAGGGTGAAGCCAGAGGAA--TCT 974919 Query 623 GGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCG 661 ||||||| || || ||| ||| | || ||||| |||| Sbjct 974920 AGTGGAGGTTCATAGTGGTCCTGACATGTAAATCAATCG 974958 >seq699 Length=159171411 Score = 95.1 bits (104), Expect = 5e-17 Identities = 94/121 (78%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 563 CTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCT 622 ||||| |||||| |||||||||||||||||||| ||| ||||||||||||||| || Sbjct 103052252 CTGTTAGGACCCCAAAGATGGTGAACTATGCCTAGGCAGGATGAAGCCAGAGGAAA--CT 103052195 Query 623 GGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCG 682 |||||||| || ||| | ||| || |||||| | ||| |||||||||||| | Sbjct 103052194 GGTGGAGGTCCGTAGCCATCCTGATGTAGAAATCGGTTGTCCGCCCTGGGTATAGGGGTG 103052135 Query 683 A 683 | Sbjct 103052134 A 103052134 >seq1195 Length=124281992 Score = 87.8 bits (96), Expect = 7e-15 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 586 AACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTG 645 ||||||||||| ||||| ||||||||||||||||||||||||| | || ||| ||| Sbjct 82452594 AACTATGCCTGGGTAGGGCAAAGCCAGAGGAAACTCTGGTGGAGGTCCATAGAGGTCCTG 82452535 Query 646 GCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 | ||||||| | ||||| | |||||||||| || Sbjct 82452534 ACATGCAAATTGGTCGTCTGACCTGGGTATAGGAGC 82452499 >seq848 Length=158406734 Score = 84.2 bits (92), Expect = 9e-14 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||| || |||| ||||||||||||| | | || |||||| | | ||||| ||||||| Sbjct 84728112 GAGCCGGGTTGCTTGGGAATGCAGCCCATAGCAGGTGGTAAACTCCATCTAAGGCTAAAT 84728171 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| |||||| | | ||||| ||||||| || ||| | Sbjct 84728172 ACCGGCACGAGACCGATAGTCAACAAGTGCCATAAGGGAAAGTTGAAAAGAACATTGAAG 84728231 Query 160 AGAGAGTTAAAAAG 173 |||||||| || || Sbjct 84728232 AGAGAGTTCAAGAG 84728245 >seq1820 Length=98464013 Score = 78.8 bits (86), Expect = 4e-12 Identities = 93/126 (74%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||| |||||||||||||||||| | || || |||||| | | ||| | ||||||| Sbjct 16198333 GAGTCAGGTTGTTTGGGAATGCAGCCCAAAGCAGGTGGTAAACTCCATCTCAGGCTAAAT 16198392 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | || ||||| |||| ||||||| || | |||| ||||||| |||||| | Sbjct 16198393 ACCTGCACAAGACCAATAGTCAACAAGTACCGTAAGGCAAAGTTGAAAAGAACTTTGAAG 16198452 Query 160 AGAGAG 165 |||||| Sbjct 16198453 AGAGAG 16198458 >seq435 Length=190850796 Score = 77.0 bits (84), Expect = 1e-11 Identities = 67/82 (82%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAAT-AGGGTGAA 607 ||| | ||||| || |||| ||||| |||||||||| |||||| | | |||||||| Sbjct 51432778 GAGCATGAGCACAGGTGTTAGGACCTGAAAGATGGTAAACTATTCTCCAGGCAGGGTGAA 51432837 Query 608 GCCAGAGGAAACTCTGGTGGAG 629 | |||||||||||||||||||| Sbjct 51432838 GACAGAGGAAACTCTGGTGGAG 51432859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079695302750