Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= AAMG01000530.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq1334 80.6 3e-13 seq1195 78.8 1e-12 seq869 78.8 1e-12 seq868 78.8 1e-12 seq1882 73.4 4e-11 >seq1334 Length=132174527 Score = 80.6 bits (88), Expect = 3e-13 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 12 GTGATATAGTTCCTAATATCTAAGTGGGGAGAGGATGATATTACTCCCAATATGGCA 68 ||||||| ||||||||||| | ||| |||||||||||||||||||||||||||||| Sbjct 46763018 GTGATATTGTTCCTAATATGCAGGTGAGGAGAGGATGATATTACTCCCAATATGGCA 46762962 Score = 80.6 bits (88), Expect = 3e-13 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 12 GTGATATAGTTCCTAATATCTAAGTGGGGAGAGGATGATATTACTCCCAATATGGCA 68 ||||||| ||||||||||| | ||| |||||||||||||||||||||||||||||| Sbjct 46763704 GTGATATTGTTCCTAATATGCAGGTGAGGAGAGGATGATATTACTCCCAATATGGCA 46763648 >seq1195 Length=124281992 Score = 78.8 bits (86), Expect = 1e-12 Identities = 52/57 (91%), Gaps = 2/57 (4%) Strand=Plus/Minus Query 12 GTGATATAGTTCCTAATATCTAAGTGGGGAGAGGATGATATTACTCCCAATATGGCA 68 ||||||| ||||||||||||| | |||||||||||||||||||||||||||| ||| Sbjct 26098737 GTGATATTGTTCCTAATATCT--GGGGGGAGAGGATGATATTACTCCCAATATCGCA 26098683 >seq869 Length=35783 Score = 78.8 bits (86), Expect = 1e-12 Identities = 61/70 (87%), Gaps = 2/70 (3%) Strand=Plus/Plus Query 9 CCCGTGATATAGTTCCTAATATCTAAGTG-GGGAGAGGATGATATTACTCCCAATATGGC 67 |||||||||| |||||||||| || ||| |||| |||||||||||||||||||||| || Sbjct 21147 CCCGTGATATTATTCCTAATATTTA-GTGAGGGAAAGGATGATATTACTCCCAATATTGC 21205 Query 68 ACAAATTGTA 77 |||| |||| Sbjct 21206 ACAAGGTGTA 21215 Score = 77.0 bits (84), Expect = 3e-12 Identities = 82/103 (80%), Gaps = 4/103 (4%) Strand=Plus/Plus Query 8 TCCCGTGATATAGTTCCTAATATCTAAGT-GGGGAGAGGATGATATTACTCCCAATATGG 66 ||| ||||| | ||||||||||| | ||| |||||||||||||||||||||||||||| | Sbjct 20546 TCCTGTGATGTTGTTCCTAATAT-TCAGTGGGGGAGAGGATGATATTACTCCCAATATTG 20604 Query 67 CACAAATTGTA-AAACCC-TTTCGATATATTTCCTACAATCCA 107 || | |||| | |||| | ||||| ||| ||| ||||| Sbjct 20605 CAGGGAATGTACACACCCACTGTGATATTTTTTCTAATATCCA 20647 >seq868 Length=32250 Score = 78.8 bits (86), Expect = 1e-12 Identities = 61/70 (87%), Gaps = 2/70 (3%) Strand=Plus/Plus Query 9 CCCGTGATATAGTTCCTAATATCTAAGTG-GGGAGAGGATGATATTACTCCCAATATGGC 67 |||||||||| |||||||||| || ||| |||| |||||||||||||||||||||| || Sbjct 27487 CCCGTGATATTATTCCTAATATTTA-GTGAGGGAAAGGATGATATTACTCCCAATATTGC 27545 Query 68 ACAAATTGTA 77 |||| |||| Sbjct 27546 ACAAGGTGTA 27555 Score = 77.0 bits (84), Expect = 3e-12 Identities = 60/72 (83%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 12 GTGATATAGTTCCTAATATCTAAGTGGGGAGAGGATGATATTACTCCCAATATGGCACAA 71 ||||||| |||||||||||| | | ||||||||| ||||||||||||| |||||| || Sbjct 25368 GTGATATTGTTCCTAATATCCAGGAGGGGAGAGGGTGATATTACTCCCCATATGGTGGAA 25427 Query 72 ATTGTAAAACCC 83 | |||| | ||| Sbjct 25428 AGTGTACATCCC 25439 Score = 77.0 bits (84), Expect = 3e-12 Identities = 82/103 (80%), Gaps = 4/103 (4%) Strand=Plus/Plus Query 8 TCCCGTGATATAGTTCCTAATATCTAAGT-GGGGAGAGGATGATATTACTCCCAATATGG 66 ||| ||||| | ||||||||||| | ||| |||||||||||||||||||||||||||| | Sbjct 26885 TCCTGTGATGTTGTTCCTAATAT-TCAGTGGGGGAGAGGATGATATTACTCCCAATATTG 26943 Query 67 CACAAATTGTA-AAACCC-TTTCGATATATTTCCTACAATCCA 107 || | |||| | |||| | ||||| ||| ||| ||||| Sbjct 26944 CAGGGAATGTACACACCCACTGTGATATTTTTTCTAATATCCA 26986 Score = 73.4 bits (80), Expect = 4e-11 Identities = 51/57 (89%), Gaps = 1/57 (2%) Strand=Plus/Plus Query 12 GTGATATAGTTCCTAATATCTAAGTGGGGAGAGGATGATATTACTCCCAATATGGCA 68 |||||||||||||||||||| | | ||||| |||||| ||||||||||||||| ||| Sbjct 28247 GTGATATAGTTCCTAATATCCATG-GGGGAAAGGATGTTATTACTCCCAATATCGCA 28302 >seq1882 Length=96796970 Score = 73.4 bits (80), Expect = 4e-11 Identities = 52/60 (87%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 9 CCCGTGATATAGTTCCTAATATCTAAGTGGGGAGAGGATGATATTACTCCCAATATGGCA 68 ||||| |||| ||| |||||||| || ||||| |||||||||||||||||||||| ||| Sbjct 16855590 CCCGTAATATTGTTTCTAATATCCAAAGGGGGAAAGGATGATATTACTCCCAATATCGCA 16855531 Score = 73.4 bits (80), Expect = 4e-11 Identities = 55/65 (85%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 13 TGATATAGTTCCTAATATCTAAGTGGGGAGAGGATGATATTACTCCCAATATGGCACAAA 72 ||||| |||||||||||| | || |||| |||||||||||||||||||||| ||| || Sbjct 86995078 TGATACTGTTCCTAATATCCAGGTAGGGACAGGATGATATTACTCCCAATATTGCAGGAA 86995019 Query 73 TTGTA 77 |||| Sbjct 86995018 GTGTA 86995014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511929543200