Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq1112 167 4e-39 seq274 140 5e-31 seq2078 134 2e-29 seq1441 123 4e-26 seq2320 116 6e-24 seq1195 116 6e-24 seq1 95.1 2e-17 >seq1112 Length=128169293 Score = 167 bits (184), Expect = 4e-39 Identities = 107/117 (91%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | |||||||||||||||||||||||||||||||||| |||||||| Sbjct 126358339 CTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 126358280 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 126358279 ACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCTATCAATCTGTC 126358223 >seq274 Length=204313951 Score = 140 bits (154), Expect = 5e-31 Identities = 164/220 (75%), Gaps = 9/220 (4%) Strand=Plus/Minus Query 46 CTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCC 105 ||||||||||||||| ||||||||||| | | || || ||| | |||| | |||| Sbjct 65017890 CTAAGGGCATCACAGCCCTGTTATTGCTTGATC--TCAGGTGACTGAATGCCACTTGTCC 65017833 Query 106 CTCTAAGAAGCCAGCCA---CCAAC----CATAGTCGATGGGGCTATTTAGCAGGTTAAG 158 |||||||||| | | ||||| || | ||| ||| ||||| | | Sbjct 65017832 CTCTAAGAAGTTGGAGAATGCCAACTGCTCAGGGATCATGTAACTAGCTAGCATGCCAGA 65017773 Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||||| ||| |||||||||||||||||||| ||| ||||||||||||| || ||||||| Sbjct 65017772 GTCTCATTCCTTATCGGAATTAACCAGACAGATCGCTCCACCAACTAACAAGAGCCATGC 65017713 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 || ||||| ||||| || |||||||| | |||||||||| Sbjct 65017712 ACAACCACGCATAGGATTGAGAAAGAGATGTCAATCTGTC 65017673 >seq2078 Length=44557958 Score = 134 bits (148), Expect = 2e-29 Identities = 108/128 (84%), Gaps = 2/128 (2%) Strand=Plus/Plus Query 131 AGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAA 190 |||| ||||| ||| ||| | | | |||| |||| ||||| |||||||||||||||| Sbjct 27950020 AGTC-ATGGGACTAGTTACTATGCCAGAGTCTGGTTCATTATCAGAATTAACCAGACAAA 27950078 Query 191 TCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATC 250 | ||||||||| ||||||||||||||||||| ||||| |||||| ||||||||||||| Sbjct 27950079 TTGCTCCACCAATTAAGAACGGCCATGCACCA-AACCCACAGAATCCAGAAAGAGCTATC 27950137 Query 251 AATCTGTC 258 |||||||| Sbjct 27950138 AATCTGTC 27950145 >seq1441 Length=130397257 Score = 123 bits (136), Expect = 4e-26 Identities = 98/117 (84%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | ||||| ||| |||| |||||||||||||||||| |||||||| Sbjct 109022058 CTAGTTAGCATTTCA--GTCTCATTCATTATTGGAATTAACCAGACAAATTGCTCCACCA 109022115 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||| |||||||||||| ||| |||||||| |||| ||||||| Sbjct 109022116 ACTAAGAACGGCCATACACCACCACCCACGTAATTGAGAAAGAGTTATCGATCTGTC 109022172 >seq2320 Length=142054208 Score = 116 bits (128), Expect = 6e-24 Identities = 171/237 (72%), Gaps = 9/237 (4%) Strand=Plus/Minus Query 29 CGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGG 88 ||||| |||| ||| ||||| ||||| |||| ||| || ||| |||| || | ||| Sbjct 33199696 CGTGCAGCCCCAGACACCTAAGAGCATCTCAGAACTGCTACTGC-TCAATCTGA-AGTGG 33199639 Query 89 CTGGAAGCCAATAGTCCCTCTAAGAAGCCA---GCCACCAACCA-TAGTCGATGGGGCTA 144 ||| | |||| | |||||| |||||| | | ||| ||| | | | ||| | | Sbjct 33199638 CTGAATGCCACTTGTCCCTATAAGAAACTGAGGGACACTAACGACTTGGGGATTGCAAAA 33199579 Query 145 T---TTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||| | | |||| ||| ||||| ||||| ||||| |||||||||| ||| Sbjct 33199578 CACATTAGCATGCCAGAGTCTTATTCTTTATCAGAATTGACCAGGCAAATCACTCAGCCA 33199519 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||| |||||| || |||| |||| |||| ||||| || |||||||||||| Sbjct 33199518 ACTAAGAAGGGCCATTCATCACCTCCCACAGAAGTGAGAAACAGTTATCAATCTGTC 33199462 >seq1195 Length=124281992 Score = 116 bits (128), Expect = 6e-24 Identities = 98/120 (82%), Gaps = 3/120 (3%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | ||||| || ||||| || ||||||||| ||||||||||| || Sbjct 610902 CTAGTTAGCATGCCAGAGTCTCATTTATTATCAGAGTTAACCAGAGAAATCACTCCAGCA 610843 Query 202 ACTAAGAACGGCCATG---CACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 || ||||| ||||||| ||||||||||||| ||||| ||||| ||||||| ||||||| Sbjct 610842 ACCAAGAAGGGCCATGGACCACCACCACCCATGGAATCGAGAAAAAGCTATCCATCTGTC 610783 >seq1 Length=210400635 Score = 95.1 bits (104), Expect = 2e-17 Identities = 82/99 (83%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||| ||| |||| | ||||||||||| |||||||||||||||||| || Sbjct 185503986 GTCAGTGTAGCGCGCATGCAGCCCCGGACATCTAAGGGTATCACAGACCTGTTATTG-CT 185504044 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGA 113 || | || |||||| | |||| | ||||||| |||| Sbjct 185504045 CACTC-TCGGGTGGCTGAACGCCACTTGTCCCTCCAAGA 185504082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796690351605