Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq274 316 3e-84 seq2940 275 1e-71 seq1112 87.8 3e-15 >seq274 Length=204313951 Score = 316 bits (350), Expect = 3e-84 Identities = 248/295 (84%), Gaps = 1/295 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||||||||||| Sbjct 109929286 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 109929227 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 |||||||||||| |||||||||||||||||||||||| ||||||||||||| |||| | Sbjct 109929226 ATGACGGTCTAATCCCAGCTCACGTTCCCTATTAGTGAGTGAACAATCCAATGCTTGGTG 109929167 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| || || ||| Sbjct 109929166 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACATCACTA 109929107 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||| |||| || ||||||||||||||||||||||||||||||||||| |||||| | Sbjct 109929106 TGAATGCTTCGCAGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTCCT 109929047 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 | ||| | || | |||||||| ||||| | |||||| ||| |||||||| Sbjct 109929046 TAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTCA 109928992 Score = 250 bits (276), Expect = 4e-64 Identities = 198/238 (83%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 57 CTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTA 116 |||||||| |||||| |||||||||| |||||||||| |||| ||||||||||| |||| Sbjct 65032038 CTCATGACAGTCTAATCCCAGCTCACATTCCCTATTACTGGGAGAACAATCCAATGCTTG 65032097 Query 117 CCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCG 176 |||||||| ||| ||||||||||||||| |||| |||||| ||||||||||||||| Sbjct 65032098 GTGAATTCTGTTTCACAATGATAGGAAGAGCCAACATTGAAGGACCAAAAAGCAACGTCG 65032157 Query 177 CTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTA 236 |||||||| |||||| |||||||| ||||||||||||||||||||||||| |||||| Sbjct 65032158 CTATGAACTCTTGGCCACCACAAGCTAGTTATCCCTGTGGTAACTTTTCTGACACCTCCT 65032217 Query 237 GCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 || | ||| | || | ||||||||| ||| |||||||||||| | |||||| Sbjct 65032218 GCTTAAAACCCAAAAGGTCAAAAGGATCGTGCAGCCCCACTTTCATGGTCTATATTCA 65032275 >seq2940 Length=803192 Score = 275 bits (304), Expect = 1e-71 Identities = 218/262 (83%), Gaps = 0/262 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||| Sbjct 506626 TCATCAGTAGGGTAAAACTAACCTGCCTGGTGATGGTCTAAACCCAGCTCACGTTCCCTA 506685 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||| |||||||| || |||||||| |||||||||||||| || Sbjct 506686 TTAGTGGGTGAACAAGCCAACGCTGGGTGAGCTCTGCTTCACAATGATAGGAAGAGCTGA 506745 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| | |||||||| || |||||| ||||||||| || ||||| Sbjct 506746 CATCGAAGGATCAAAAAGCGATGTCGCTATAAATGCTTGGATGCCACAAGACAACTATCC 506805 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||||||||||| |||||| || ||||| | || | || || | ||| Sbjct 506806 CTGTGGTAACTTTTCTGACACCTCCTGCTTCAAACCCAAATGGTCAGAAAAATTGTGAGG 506865 Query 271 CCACACTTTCATGGTTTGTATT 292 || |||||||||||| ||||| Sbjct 506866 CCCCACTTTCATGGTCCGTATT 506887 Score = 266 bits (294), Expect = 6e-69 Identities = 236/294 (80%), Gaps = 1/294 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || |||| |||||||||||||||||||||||| Sbjct 469878 TACTGAGCAGGATTACCATGGCAACAACACATCATAAGTAGGGTAAAACTAACCTGTCTC 469819 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 |||| ||||||||||||||||||||| |||||||| |||||||||| |||| ||| | Sbjct 469818 ATGATGGTCTAAACCCAGCTCACGTTTCCTATTAGAGGGTGAACAAGCCAATACTTGGTG 469759 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 | || |||||| |||||||||||||| |||||| ||||||||||||| | ||| ||| Sbjct 469758 AGTTATGCTTCACAATGATAGGAAGAGCTGACATCTAAGGATCAAAAAGTGATGTCTCTA 469699 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 ||||||||||| |||||||| || ||||||||||||||||||||| |||||| | Sbjct 469698 TGAACGCTTGGAGGCCACAAGACAACCATCCCTGTGGTAACTTTTCTGACACCTCCTCCT 469639 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||||| | || | ||||||| ||||| | |||||||||| ||||||| Sbjct 469638 TCAAACCCAAAAGGTCAGGAGGATCGTGAGGCCCCGCTTTCATGGTCTGTATTC 469585 >seq1112 Length=128169293 Score = 87.8 bits (96), Expect = 3e-15 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 193 GCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGG 252 ||||||||||||||||||||||||||||||||||| |||||| || | ||| | | Sbjct 32194891 GCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAG 32194950 Query 253 GACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | | |||||||| ||||| |||||| ||| ||||||| Sbjct 32194951 GTCAGAAGGATCGTGAGGCCCTGCTTTCACGGTCTGTATTC 32194991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854278632480