Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq1 149 1e-33 seq274 78.8 2e-12 >seq1 Length=210400635 Score = 149 bits (164), Expect = 1e-33 Identities = 165/216 (76%), Gaps = 3/216 (1%) Strand=Plus/Minus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 ||||||||||||||||||| ||||||||||| | |||| ||| ||||||||||||||| | Sbjct 185504043 GCAATAACAGGTCTGTGATACCCTTAGATGTCCGGGGCTGCATGCGCGCTACACTGACTG 185503984 Query 174 AGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGT-CGT 232 || | || | | ||| ||| | ||| |||||| | ||||||| | | | | Sbjct 185503983 GCTCAGTGTGTGCCTACCCTACGCCAGCAGGCGCGGGTAACCC-GTTAAACCCCATTCAT 185503925 Query 233 GCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGT 292 | ||||||| | |||||||||||| | | | |||||||||| || |||||| | || Sbjct 185503924 GATGGGGATCAGGGATTGCAATTATTCCACATGAACGAGGAATTCCCAGTAAGGGTAGGT 185503865 Query 293 CATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||| ||| ||||||||||| |||||| |||||| || Sbjct 185503864 CATAAGCTCGCGTTGATTAAGTCCCT-CCCTTTTTA 185503830 >seq274 Length=204313951 Score = 78.8 bits (86), Expect = 2e-12 Identities = 125/178 (70%), Gaps = 1/178 (1%) Strand=Plus/Minus Query 132 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCAC 191 ||||||||||||| |||| ||||| | ||||||||||| | || || || | | | Sbjct 181200865 TGCCCTTAGATGTCTGGGGCTGCACGTGGGCTACACTGACTGGATCAGCGTGTGCCTACC 181200806 Query 192 CTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGT-CGTGCTGGGGATAGAGCATTG 250 | |||| || | ||||| | | ||| || | |||| |||||| | | |||| Sbjct 181200805 CCATTCCGGCAGATGCTGGTAACCCCTTGAAATCCTATTCGTGATGGGGACTGGGGATTG 181200746 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 |||||||| | | | ||||| |||| || ||||| ||| ||||| ||| || |||| Sbjct 181200745 CAATTATTCCCCATGAACGAAGAATTCCCAGTAAATGCGGGTCATAAGCTTGCATTGA 181200688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947065450240