Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq274 86.0 1e-14 seq2147 77.0 5e-12 >seq274 Length=204313951 Score = 86.0 bits (94), Expect = 1e-14 Identities = 90/113 (80%), Gaps = 4/113 (4%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAG- 59 ||| || ||||||||| | |||||| | ||||| | || | || |||| ||||| Sbjct 109929284 GTAAGAAAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAG-AGGCAAA 109929340 Query 60 TGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAAT 112 || |||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 109929341 TGGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAAT 109929393 >seq2147 Length=50472720 Score = 77.0 bits (84), Expect = 5e-12 Identities = 87/114 (76%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||| |||||||| || | |||||| | ||||| | || | || |||| || || Sbjct 50274439 GTACCAGAGGAACTGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAC 50274382 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||| || ||||| |||||||||||||||||| Sbjct 50274381 GGGGCGAAGCTACCATCTGTGGGATCATTACTGAAGGCCTCTAAGTCAGAATCC 50274328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819087269120