Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq2277 205 3e-50 seq2940 201 3e-49 seq9439 141 3e-31 seq1 136 1e-29 seq435 123 8e-26 seq1947 93.3 1e-16 >seq2277 Length=7801 Score = 205 bits (226), Expect = 3e-50 Identities = 176/213 (83%), Gaps = 5/213 (2%) Strand=Plus/Minus Query 7 ATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCG 65 |||||| ||||| | || |||||||| ||||||| ||||| |||||| ||||||| | Sbjct 6297 ATTCCACTTACAGGGCCTCAAAAGAGTCCTGTATTGTTATTTTTTGTCAGTACCTCCATG 6238 Query 66 TGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCA 125 || ||| |||||||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct 6237 GTTCAGGAGTGGGTAATTTGCATGCCTGCTGCCTTCCTTGGATGTGGTAGCCATTTCTCA 6178 Query 126 GGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGC-C 184 ||||||||||||| |||| || || ||||||| | ||| || | |||||||||||| | Sbjct 6177 GGCTCCCTCTCCGATATCGCACTCTGATTCCCCATCACCTGTGGTCACCATGGTAGGCAC 6118 Query 185 A-CTATCCTACCATCGAAAGTTGATAGGGCAGA 216 | | | || |||||||||||||||||||||| Sbjct 6117 AGCGA--GTAACATCGAAAGTTGATAGGGCAGA 6087 >seq2940 Length=803192 Score = 201 bits (222), Expect = 3e-49 Identities = 169/204 (83%), Gaps = 4/204 (2%) Strand=Plus/Plus Query 25 AAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTT 84 ||||||| ||||||| ||||| |||||||||||||| || || ||| ||| |||||| Sbjct 531537 AAAAGAGTCCTGTATTGTTATTTTTTGTCACTACCTCCACGGTTCAGGAGTGGATAATTT 531596 Query 85 GCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCG 144 || ||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 531597 GCATGCCTGCTGCCTTCCTTGGATGTGGTAGCCATTTCTCAGGCTCCCTCTCCGATATCA 531656 Query 145 AACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGC-CA-CTATCCTACCATCGAAA 202 || || ||||||| | ||| || | |||||||||||| || | | ||||||||||| Sbjct 531657 CACTCTGATTCCCCATCACCTGTGGTCACCATGGTAGGCACAGCGA--GTACCATCGAAA 531714 Query 203 GTTGATAGGGCAGAAATTTGAATG 226 |||||||||||||| |||| ||| Sbjct 531715 GTTGATAGGGCAGATGTTTGGATG 531738 Score = 192 bits (212), Expect = 2e-46 Identities = 184/234 (79%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 ||||| | | ||||| | || |||||||| ||||||| ||||| | |||| ||||| Sbjct 502306 ACTCACTAAACTTACAGGGCCTCAAAAGAGTCCTGTAT---TATTTTTCATCACAACCTC 502250 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 ||| ||| ||| ||||||||||| |||||||||||||||||||||||||| || | ||| Sbjct 502249 CCCAGGTCAGGAGTGGGTAATTTGTGCGCCTGCTGCCTTCCTTGGATGTGGCAGGCATTT 502190 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||| | | ||||||||||| ||||||| | |||||| | |||||||||| Sbjct 502189 CTCAGGCTCATTTTTTGGAATCGAACCTCGATTCCCCATCACCCGTGGTCACCATGGTAG 502130 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGC 235 || ||||||| |||||||||||||||||| || ||||| |||||| Sbjct 502129 GCATGGCGACTACCATTGAAAGTTGATAGGGCAGACGTTCGAATGGGTCATCGC 502076 Score = 105 bits (116), Expect = 2e-20 Identities = 86/103 (83%), Gaps = 1/103 (1%) Strand=Plus/Minus Query 402 ACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGAC 461 || |||||||||| ||||| ||||| ||||||||||| | | | | || |||||| Sbjct 501535 ACCATAACTGATTGAATGAAACATTCACAGTTTCACTGCACTGGCCGTGTGTATTTAGAC 501476 Query 462 ATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||| |||||||||||||||||| |||||||||| Sbjct 501475 ATGCATGGCTTAAACTTTGAGACAAGCATATG-CTACTGGCAG 501434 >seq9439 Length=16231 Score = 141 bits (156), Expect = 3e-31 Identities = 98/110 (89%), Gaps = 1/110 (1%) Strand=Plus/Plus Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454 |||| ||| ||||||||||||||||||||||||||||||||||||| | | | || Sbjct 505 CAAAGGAACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGTGTA 564 Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 565 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 613 >seq1 Length=210400635 Score = 136 bits (150), Expect = 1e-29 Identities = 144/187 (77%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 40 CAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCT 99 || ||||| ||||||| || ||| | | |||| ||||||||||| || |||||||| Sbjct 106570825 CATTATTTTTTGTCACCACTTCCTGATTT-GGGAGTGGGTAATTTGTATGCTTGCTGCCT 106570883 Query 100 TCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCG 159 ||||| |||||||||||| |||||||||||| | |||| ||||| |||||| ||| || | Sbjct 106570884 TCCTTTGATGTGGTAGCCATTTCTCAGGCTCTCACTCCTGAATCAAACCCTCATT-CCTG 106570942 Query 160 TTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAAT 219 | |||| | | ||||| | |||| || ||||| |||||||||| || ||| | Sbjct 106570943 TCACCCATGGTCACCATAGGAGGCAGAGTGACTGCCATCAAAAGTTGATATGGTAGATGT 106571002 Query 220 TTGAATG 226 ||||||| Sbjct 106571003 TTGAATG 106571009 >seq435 Length=190850796 Score = 123 bits (136), Expect = 8e-26 Identities = 94/110 (85%), Gaps = 1/110 (1%) Strand=Plus/Minus Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454 |||| ||| ||||||||||| |||||||||| ||||||||||||| | | || Sbjct 62830998 CAAAGGAACCATAACTGATTTGATGAGCCATTTACAGTTTCACTGTACTGGCCATGTGTA 62830939 Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 62830938 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 62830890 >seq1947 Length=74750902 Score = 93.3 bits (102), Expect = 1e-16 Identities = 78/93 (84%), Gaps = 2/93 (2%) Strand=Plus/Plus Query 135 TCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTA-TCCTA 193 ||| |||||||||||||||||||| | |||| | | |||||||||||| ||| | ||| Sbjct 8009718 TCCAGAATCGAACCCTAATTCCCCATCACCCATGGTTACCATGGTAGG-CACGACGACTA 8009776 Query 194 CCATCGAAAGTTGATAGGGCAGAAATTTGAATG 226 ||||| ||||||||||||||||| || ||||| Sbjct 8009777 CCATCAAAAGTTGATAGGGCAGACGTTCGAATG 8009809 Score = 75.2 bits (82), Expect = 3e-11 Identities = 113/155 (73%), Gaps = 13/155 (8%) Strand=Plus/Minus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA---GTAAGGT-ACTATC-AA 397 ||||||| | |||||||||| |||||| | |||| | | | || || | | | || Sbjct 44883078 AGCATGTCTCAGCTCTAGAACTACCACAGACATCCCCGAAAGAGAAAAGTGAGTGGCTAA 44883019 Query 398 ATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA---TAGAT-TGCTTAT 453 | | | || | ||||||||||||||||| ||||||||||||| || ||| Sbjct 44883018 AGGATCCATCAATGATTTAATGAGCCATTTACAGTTTCACTGTACCCGCCATGTGC---- 44882963 Query 454 ACTTAGACATGCATGGCTTAATCTTTGAGACAAGC 488 || |||||||||||||||||||| || ||||||| Sbjct 44882962 ACCTAGACATGCATGGCTTAATCCTTCTGACAAGC 44882928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510185447680