Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq435 215 4e-51 seq798 206 2e-48 seq1004 174 1e-38 seq1882 98.7 8e-16 >seq435 Length=190850796 Score = 215 bits (238), Expect = 4e-51 Identities = 608/916 (66%), Gaps = 22/916 (2%) Strand=Plus/Plus Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084 ||||||| || || ||| || || | || || || | |||||||| ||||| | | Sbjct 47339751 ATGAACCGCTGCTGAGAGAAAACCCGTGCCGCTTTGTCATTTTCCCCATGGAGTACCACG 47339810 Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATT 61144 |||| |||| ||||| || |||||||| || ||||||||||| | ||||||| || Sbjct 47339811 ATATCTGGCAGATGTATAAGAAGGCGGAGGCCTCCTTCTGGACCGCC-AGGAGGTGGACC 47339869 Query 61145 TGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGC-GGTGAACA-ACATTTCATTAA 61202 ||||||| ||||| ||||||| | | ||| || | | | | | || || Sbjct 47339870 TGTCCAAGGACATTTGGCACTGGGAA--TCCCTGAAGCCGGAGGAGAGATACTTTATATC 47339927 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 ||||| |||| |||||||| || || || || || ||||| || || |||| | Sbjct 47339928 CCATGTTCTGGCTTTCTTTGCAGCAAGTGATGGCATAGTAAATGAAAACTTGGTGGAGTG 47339987 Query 61263 -TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321 ||| || || || || || | | || || | |||||||| |||||||| ||||||| Sbjct 47339988 ATTTAGC-CAAGAAGTTCAGATTACAGAAGCCTGCTGTTTCTATGGCTTCCAAATTGCCA 47340046 Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGG 61381 |||| || | || || || ||||| ||| | || || || || ||||| | || | Sbjct 47340047 TGGAAAACATACATTCTGAAATGTATAGTCTCCTTATTGACACTTACATAAAAGATCCCA 47340106 Query 61382 CGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGG 61441 ||| | ||| | ||||||||||| || ||||| || || ||| ||| || | Sbjct 47340107 ACGAAAGGGAATTTCTCTTCAATGCCATTGAAACGATGCCTTGTGTCAAGAAGAATGCAG 47340166 Query 61442 ATTGGGCCTTCAATTGGATCACCAGTACAA--CGGCTACATTTGGTGAACGATTGCTGGC 61499 ||||| |||| ||||| | |||| | |||| | ||||||| | | | || Sbjct 47340167 ATTGGACCTTGCCCTGGAT--TGGGGACAAAGAGACTACCTATGGTGAAGGTGTCGTAGC 47340224 Query 61500 ATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAA 61559 ||||| | || || || | || || ||| || ||||| | || || ||| | || Sbjct 47340225 CTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCCATATTCTGGCTCAA 47340284 Query 61560 GAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATG-AGTTGATATCACGCGACGAGG 61618 |||||| ||||| ||||| || || || || |||| | || || || | || |||| Sbjct 47340285 GAAACGAGGACTGATGCCTGGCCTCACATTTTCTAATGAACTTATTAGCA-GAGATGAGG 47340343 Query 61619 GCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGG 61678 | | || |||||||||||| || | ||||||| | || || | || || | Sbjct 47340344 GTTTACACTGTGATTTTGCTTGCCTGATGTTCAAAC---AGCTAGTACACAAACCATCAG 47340400 Query 61679 AGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTG 61738 ||||| | || | || || || | || | || |||||||| | || |||| Sbjct 47340401 AGGAGAGAGTAAGAGAAATAATTATCAATGCTATTCGGATAGAACAGGAGCTCCTCACTG 47340460 Query 61739 ACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAAT 61798 | || ||||| || ||||| || | |||||| |||||| ||| | ||||| | Sbjct 47340461 AGGCCTTGCCTGTGAAGCTCATTGGGAAGAATTGCACTCTAATGAAGCAATGCATTGAGT 47340520 Query 61799 TTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGC--GGATCT-ATAATACGAAAA 61855 |||| || ||| | || || | || ||||| | ||| || | | | | || | | Sbjct 47340521 TTGTAGCAGACAGACTTATGCTGGAACTGGGT-TTTAGCAAGGTTTTCAGAGTA--GAGA 47340577 Query 61856 ACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAAC 61915 | |||||||| || ||||| | ||||| ||||| || ||||| || || || ||||| Sbjct 47340578 ATCCATTTGACTTTATGGAGAATATTTCACTGGAAGGAAAGACTAACTTCTTTGAGAAGA 47340637 Query 61916 GTGTAGGCGACTATCA 61931 | |||||| | ||||| Sbjct 47340638 GAGTAGGCAAGTATCA 47340653 >seq798 Length=25304 Score = 206 bits (228), Expect = 2e-48 Identities = 580/875 (66%), Gaps = 23/875 (3%) Strand=Plus/Plus Query 61066 TTCCCCATCGAGTATGAGGATATTTGGCG--CATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 |||||| ||||||| | ||||| | || |||||| | |||||||| || ||||||| Sbjct 832 TTCCCCGTCGAGTACCACGATATCTCGCAGACATGTA--AGAAGGCGGAGGCCTCCTTCT 889 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCG 61183 |||| | |||||||| || |||||| ||||| | ||||||| | | || Sbjct 890 GGACCGCCGAGGAGGTGGACCTGTCCA--GACATTCAGCACTGGGAATCCCTGAAGCCCG 947 Query 61184 GTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCA 61243 ||| | | || || || || |||| |||||||| | || || || || | Sbjct 948 AGGAAAGATACTTTATATCCCACGTTCTGGCTTTCTTTGCAGTGAATGATGGCATAGTAA 1007 Query 61244 ATGAGAATTTATTGGAACG-TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTC 61302 |||| || || |||| || ||| || ||| | || || | | || || || |||||| Sbjct 1008 ATGAAAACTTGGTGGAGCGATTTAGC-CAGTAAGTTCAGATCACAGAAGCCCGCTGTTTC 1066 Query 61303 TACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGAT 61362 || |||||||| ||||||||||| || | || || || ||||| ||| | | || || Sbjct 1067 TATGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTATAGTCTCCGTATTGAC 1126 Query 61363 ACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCG 61422 || || || | || | ||| | ||| | ||||||||||| || ||||| || Sbjct 1127 ACTTATATAAAAGATCCCAACGAAAGGGAATTTCTCTTCAATGCCATTGAAACGATGCCT 1186 Query 61423 GCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACG--GCTACAT 61480 || ||| ||| || || |||||||| ||||| | |||| | ||||| | Sbjct 1187 TGTGTCAAGAAGAAGGCAGACTGGGCCTTGTGCTGGATTGG--GGACAAAGACGCTACCT 1244 Query 61481 TTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTG 61540 ||||||||| | | || ||||| | || || || || || || ||| || |||| Sbjct 1245 ATGGTGAACGCGTCGTAGCCTTTGCTGCAGTGGAAGGCGTCTTCTTTTCTGGTTCTTTTG 1304 Query 61541 CCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGT 61600 | | || || ||| | |||||||| ||||| ||||| || || || || ||||| Sbjct 1305 CATCCATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCTAATGAAC 1364 Query 61601 TGAT-ATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTAT 61659 | || | || | || ||||| | || |||||||||||| || | ||||||| | Sbjct 1365 TTATTAGCA-GAGATGAGGGTTTACACTGTGATTTTGCTTGCCTGATGTTCAAAC---AC 1420 Query 61660 CTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATC 61719 || || | || || |||||| | || | | || || ||| | || || Sbjct 1421 CTAGTACACAAACCATCAGAGGAGAGAGTAAGATAAATAATTATTGATTCTGTTTGGATA 1480 Query 61720 GAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTA 61779 |||||||| || || ||||| || ||||| || |||| || |||||||| ||| Sbjct 1481 GAACAGGAGTTCCTCACTGAGGCCTTGCCTGTGAAGTTCATTGGGATGAATTGCACTCTA 1540 Query 61780 ATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGC-- 61837 | | ||| | ||||| ||||| || ||| | || || | || ||||| | ||| Sbjct 1541 AGGAAGCAACACATTGAGTTTGTGGCAGACAGACTTATGCTGGAACTGGGT-TTTAGCAA 1599 Query 61838 GGATCT-ATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAG 61896 || | | | | || |||| |||||||| || ||||| | ||||| | | | || ||| Sbjct 1600 GGTTTTCAGAGTA--GAAAATCCATTTGACTTTATGGAGAATATTTCACAGCAAGGAAAG 1657 Query 61897 ACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 || || || | ||||| | |||||||| ||||| Sbjct 1658 ACTAACTTCTCTGAGAAGAGAGTAGGCGAGTATCA 1692 >seq1004 Length=155834243 Score = 174 bits (192), Expect = 1e-38 Identities = 584/897 (65%), Gaps = 49/897 (5%) Strand=Plus/Plus Query 61066 TTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGG 61125 ||||||||| |||| |||| || |||| ||||| || |||| ||| || ||||||||| Sbjct 136910741 TTCCCCATCAAGTACCAGGACATCTGGCAGATGTATAAGAAGGAGGAGGCCTCCTTCTGG 136910800 Query 61126 ACGGTGGAGGAGGTCG---------------------ATTTGTCCAAAGACATGAATGAC 61164 || | |||||||| | | ||||||| ||||| || Sbjct 136910801 ACCGCCGAGGAGGTTGTGACCACCGAACCGCAGGTGGACCTGTCCAAGGACATTCGGCAC 136910860 Query 61165 TGGGAG--CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTG 61222 |||||| | | | | | || || || || || || || |||| ||||||| Sbjct 136910861 TGGGAGTCCCTGAAGCCCGAGGAGAGATACTTTATATCCCAC--GTTCTGGCTTTCTTTG 136910918 Query 61223 CCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG-TTTCGCGCAGGAGGTGCAA 61281 | || || || || || ||||| || |||| || ||| || || || || || Sbjct 136910919 CAGCGAGCGATGGCATAGTGAATGAAAACCCGGTGGAGCGATTTAGC-CAAGAAGTTCAG 136910977 Query 61282 GTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAG 61341 | | || || || |||||||| |||||||| ||||||||||| || | || || || Sbjct 136910978 ATCACAGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATACATTCTGAA 136911037 Query 61342 ATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTC 61401 ||||| || |||||| || || ||||| | || | |||| | ||| | ||| Sbjct 136911038 ATGTATAG---TCTCATTGACACTTACATAAAAGATCCCAGGGAAAGGGAATTTCTCTTC 136911094 Query 61402 AATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATC 61461 |||||||| || ||||| || || ||| ||| || ||||||||||| ||||| Sbjct 136911095 AATGCCATTGAAACGATGCCTTGTGTCAAGAAGAAGGCAGATTGGGCCTTGCGCTGGAT- 136911153 Query 61462 ACCAGTACAA--CGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTG 61519 | |||| |||||| | ||||||||| | | || ||||| | || || || Sbjct 136911154 -TGGGGACAAAGAGGCTACCTATGGTGAACGCGTCGTAGCCTTTGCTGCAGTGGAAGGCA 136911212 Query 61520 TATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCG 61579 | || || ||| || ||||| | || || ||| | |||||||| ||||| ||||| Sbjct 136911213 TCTTCTTTTCTGGTTCTTTTGCATCCATATTCTGGCTCAAGAAACGAGGACTGATGCCTA 136911272 Query 61580 GTCTGACCTTCAGCAATG-AGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCT 61638 | || | || |||| | || || || | || ||||| | || |||||||||||| Sbjct 136911273 GCCTCATATTTTCTAATGAACTTATTAGCA-GAGAGGAGGGTTTACACTGTGATTTTGCT 136911331 Query 61639 GTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGA-GAT 61697 || | ||||||| | || | | || || |||||| | || | | || Sbjct 136911332 TGCCTGATGTTCAAAC---ACCTAGGACACAAACCATCAGAGGAGAGAGTAAGAAATAAT 136911388 Query 61698 TGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACT 61757 | | || || || | || |||||||| | || ||||| || ||||| || || Sbjct 136911389 TATCAGT---GCTGTTCCGATAGAACAGGAGCTCCTCACTGAGGCCTTGCCTGTGAAGCT 136911445 Query 61758 CATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTT 61817 ||| || |||||||| |||||| ||| || |||| ||||| || ||| | || Sbjct 136911446 CATTGGGATGAATTGCACTCTAATGAAGCAATACGTTGAGTTTGTAGCAGACAGACTTAA 136911505 Query 61818 GGTCGATTTGGGTATGAAGC--GGATCT-ATAATACGAAAAACCCATTTGATTTCATGGA 61874 | | || ||||| | ||| || | | | | || | || |||||||| || ||||| Sbjct 136911506 GCTGGAACTGGGT-TTTAGCAAGGTTTTCAGAGTA--GAGAATCCATTTGACTTTATGGA 136911562 Query 61875 CATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 | ||||| ||||| || ||||| || || || ||||| | |||||||| |||| Sbjct 136911563 GAATATTTCACTGGAAGGAAAGACTAACTTCTTTGAGAAGAGAGTAGGCGAGCATCA 136911619 >seq1882 Length=96796970 Score = 98.7 bits (108), Expect = 8e-16 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| || | ||||| || |||||||| ||||| || ||| ||| |||||| Sbjct 92358803 CAGGAGGTGCAGGTTCCAGAGGCTCGCTGTTTCTATGGCTTTCAAATTCTCATCGAGAAT 92358862 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 || ||||| |||||||||||| | || || || || |||||||| || Sbjct 92358863 GTTCACTCAGAGATGTACAGTTTGCTAATAGACACTTACATCAGAGA 92358909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397499171661200