Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq2543 196 7e-48 seq36 75.2 2e-11 >seq2543 Length=8359 Score = 196 bits (216), Expect = 7e-48 Identities = 185/228 (81%), Gaps = 6/228 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||| ||||| |||||||| | ||||||||||||| | Sbjct 6717 GTACAAAGGGCAGGGACGTAATCAACGTGAGCT-GATGACTCACACTTACTAGGAATT-C 6660 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| ||| || ||||||||| | ||||| |||||| | | |||||| | || Sbjct 6659 CTCGTTCAAGGGAAATAATTGCAATTCCCGATCCCGATCACGGAGGATTTTCAAGGGGTT 6600 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| | |||| |||| | ||| | || | || ||| | | ||||||||||||||||| Sbjct 6599 ACCAGTACCTTTCGGTAATGGTTACAG-CACGCTGATTCCTCCAGTGTAGCGCGCGTGCA 6541 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTC 227 |||| | |||||||||||||||||||||||||||||| ||| |||||| Sbjct 6540 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC-AACTTC 6495 >seq36 Length=10367870 Score = 75.2 bits (82), Expect = 2e-11 Identities = 127/180 (71%), Gaps = 3/180 (2%) Strand=Plus/Plus Query 21 GTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATT 80 |||||||| ||||| ||||| ||| ||||| ||||| | ||||| | | || |||| Sbjct 1933414 GTCAACGCAAGCTT-ATGACCCGCATTTACTGAGAATT-CTTCGTTCATGGGGAATAATT 1933471 Query 81 GCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATTACCCGGACCTGTCGGCCAAG 139 ||||| | ||||| ||||||| ||||| | ||||| | |||| |||| | Sbjct 1933472 GCAATCCCCGATCCCTATCACGAATGGGGTTCAAGTGGTTACCTGCGCCTGCCGGCGTGG 1933531 Query 140 GTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCA 199 | | || || ||| |||||||||| ||||||| |||| | | ||||||||||| Sbjct 1933532 GGTAGGCACACGCTGAGCCAGTCAGTGTAGCCCGCGTGCAGCCCCGGATATCTAAGGGCA 1933591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751947868540