Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq2543 163 1e-37
seq206 140 1e-30
seq116 129 2e-27
seq408 107 8e-21
seq46 89.7 2e-15
seq209 87.8 7e-15
seq749 84.2 9e-14
seq1 80.6 1e-12
seq745 77.0 1e-11
seq5 77.0 1e-11
>seq2543
Length=8359
Score = 163 bits (180), Expect = 1e-37
Identities = 114/130 (88%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613
||||| || ||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 56 AGAGCGTATATGTTGGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGA 115
Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673
||||||||||||||||| || |||| ||||| ||||||||||||||||| | || |||
Sbjct 116 GGAAACTCTGGTGGAGGTCCGAAGCGATTCTGACGTGCAAATCGATCGTCTGACTTTGGT 175
Query 674 ATAGGGGCGA 683
||||||||||
Sbjct 176 ATAGGGGCGA 185
Score = 122 bits (134), Expect = 4e-25
Identities = 125/161 (78%), Gaps = 2/161 (1%)
Strand=Plus/Plus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||||| |||||||| || |||||| | || ||| |||||| || ||||| |||||||
Sbjct 8017 GAGTCGGGTTGTTTGAGATTGCAGCCCAAAGAGGGTGGTAAACCTCATCTAAGGCTAAAT 8076
Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158
|| | ||| |||||||||||| ||||||| |||| ||||| || |||| |||||| |
Sbjct 8077 AT-GACCATGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGTTGCAAAGAACTTTGAA 8135
Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199
|||||||| || || ||||||| | ||| | |||| ||
Sbjct 8136 GAGAGAGTTCAAGAGGGCGTGAAACCGCTGAGATGGAAACG 8176
>seq206
Length=3845224
Score = 140 bits (154), Expect = 1e-30
Identities = 103/120 (86%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623
|||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 785659 TGTTAGGACCCGAACAATGGTGAACTATGCCTGGGCAGGGTGAAGCCAGAGGAAACTCTG 785600
Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
||||||| || |||||| ||| ||||||||||| || || || ||| |||||||||||
Sbjct 785599 GTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCATCCAACCTGGATATAGGGGCGA 785540
>seq116
Length=5981949
Score = 129 bits (142), Expect = 2e-27
Identities = 101/121 (83%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 563 CTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCT 622
||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1608252 CTGTTCGGACCGGAAAGATGGTGAACTATGCCTGGGCAGGGTGAAGCCAGAGGAAACTCT 1608311
Query 623 GGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCG 682
|||||||| | |||||| ||| ||||||||| | ||||| | |||||||| || |
Sbjct 1608312 GGTGGAGGTCCCTAGCGGTCCTGACGTGCAAATAGGTCGTCCGACCCGGGTATAGAGGTG 1608371
Query 683 A 683
|
Sbjct 1608372 A 1608372
>seq408
Length=1995431
Score = 107 bits (118), Expect = 8e-21
Identities = 116/154 (75%), Gaps = 0/154 (0%)
Strand=Plus/Minus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||||| |||| ||||||||||||| | || ||| |||||| ||| ||||| |||||||
Sbjct 1771537 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTTCATCTAAGGCTAAAT 1771478
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159
| ||| || || |||| ||||||| || | ||||| ||||||| |||||| |
Sbjct 1771477 ACCGGCACAAGGCCAATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 1771418
Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGG 193
|||||||| || || | ||||| ||| | |||
Sbjct 1771417 AGAGAGTTCAAGAGGGCATGAAACCGTTAAGAGG 1771384
>seq46
Length=17373732
Score = 89.7 bits (98), Expect = 2e-15
Identities = 99/132 (75%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 41 AGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATA 100
||||| |||| ||||||||||||| | || |||| ||||| | | ||||| ||||||||
Sbjct 9891880 AGTCGGGTTGCTTGGGAATGCAGCCCAAAGTGGGTAGTAAACTCCATCTAAGGCTAAATA 9891939
Query 101 TTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAA 160
| | ||||| || || ||||||| | | ||||| ||||||| |||||||| |
Sbjct 9891940 CCGACAGGAGACTGAAAGTCAACAAGTACCTTAAGAGAAAGTTGAAAAGAACTTTGGAGA 9891999
Query 161 GAGAGTTAAAAA 172
|||| |||||
Sbjct 9892000 GAGACAGAAAAA 9892011
Score = 87.8 bits (96), Expect = 7e-15
Identities = 99/132 (75%), Gaps = 2/132 (2%)
Strand=Plus/Plus
Query 41 AGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATA 100
||||| |||| ||||||||||||||| || ||| |||||| | | |||| ||||||||
Sbjct 9890007 AGTCGGGTTGCTTGGGAATGCAGCTCAAAGCGGGTGGTAAACTCCAGCTAAGGCTAAATA 9890066
Query 101 TTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAA 160
| | ||||| || || ||||||| | | ||||| ||||||| |||||| ||
Sbjct 9890067 CCGACAGGAGACTGAAAGTCAACAAGTACCTTAAGGGAAAGCTGAAAAGAACTTTG--AA 9890124
Query 161 GAGAGTTAAAAA 172
|||||| | |||
Sbjct 9890125 GAGAGTCAGAAA 9890136
>seq209
Length=3807062
Score = 87.8 bits (96), Expect = 7e-15
Identities = 85/108 (79%), Gaps = 1/108 (1%)
Strand=Plus/Minus
Query 573 CCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCT 632
|| ||||||||| |||||||||| | | || ||||||||||||||||||||| |||
Sbjct 1563291 CCAAAAGATGGTTAACTATGCCT-AGCAAGGCAAAGCCAGAGGAAACTCTGGTGCAGGTC 1563233
Query 633 CGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGG 680
|| | ||||||| | || |||||| ||| || ||||||||||||
Sbjct 1563232 CGTAATGGTTCTGATATTCAGATCGATTGTCTGATCTGGGTATAGGGG 1563185
>seq749
Length=522645
Score = 84.2 bits (92), Expect = 9e-14
Identities = 94/123 (76%), Gaps = 7/123 (6%)
Strand=Plus/Minus
Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCT-GAATAGGGTGAAGCCAGAGGAAACTCT 622
|||||||||| |||||||||||| |||||||| | |||||||||||| |||||| |||
Sbjct 313309 TGTTGGGACCTGAAAGATGGTGACCTATGCCTGGGTTAGGGTGAAGCCGGAGGAA--TCT 313252
Query 623 GGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATC----GATCGTCAAATTTGGGTATAGG 678
|| |||| || || ||| ||| | || ||||| | || || | |||| |||||
Sbjct 313251 AGTAGAGGTCCGTAGTGGTCCTGACATGTAAATCAGTTGGTCATCCGACCTGGGCATAGG 313192
Query 679 GGC 681
|||
Sbjct 313191 GGC 313189
>seq1
Length=21314971
Score = 80.6 bits (88), Expect = 1e-12
Identities = 97/127 (76%), Gaps = 5/127 (4%)
Strand=Plus/Plus
Query 41 AGTCGAGTTGTTTGGGAATGCAGCTCTAAA-TGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
||||| |||| ||||||||||||| ||||| ||| |||||| | | ||||| | |||||
Sbjct 12900252 AGTCGGGTTGCTTGGGAATGCAGC-CTAAAGCGGGTGGTAAACTCCATCTAAGGTTAAAT 12900310
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTG-- 156
|| ||| |||||| ||||| ||||||| | | ||||| ||||||| | | ||
Sbjct 12900311 ATCGGCAGGAGACCCATAGCCAACAAGTACCATAAAGGGAAAGTTGAAAAGAATTCTGAA 12900370
Query 157 GAAAGAG 163
|||||||
Sbjct 12900371 GAAAGAG 12900377
>seq745
Length=522037
Score = 77.0 bits (84), Expect = 1e-11
Identities = 95/129 (74%), Gaps = 1/129 (1%)
Strand=Plus/Minus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||| |||||| |||||||||||| | || |||| ||||| | | |||| |||||||
Sbjct 146946 GAGTTGAGTTGCTTGGGAATGCAGACCAAAGTGGGTAGTAAACTCCATCTATGGCTAAAT 146887
Query 100 -ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158
| |||| ||||| ||| ||||||| | | ||||| ||||||| | |||| |
Sbjct 146886 AACTGGCACAAGACCAGTAGTCAACAAGTACCATAAGAGAAAGTTGAAAAGAATTTTGAA 146827
Query 159 AAGAGAGTT 167
||||||||
Sbjct 146826 GAGAGAGTT 146818
>seq5
Length=16187737
Score = 77.0 bits (84), Expect = 1e-11
Identities = 73/92 (79%), Gaps = 1/92 (1%)
Strand=Plus/Minus
Query 561 AGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAAT-AGGGTGAAGCCAGAGGAAAC 619
|| |||| |||||| |||||||| |||||| || | ||||||||||||||||||||
Sbjct 6857171 AGGTGTTAGGACCCAAAAGATGGCAAACTATTCCCCAGGCAGGGTGAAGCCAGAGGAAAC 6857112
Query 620 TCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGC 651
||||||||||| | ||| || ||| | |||
Sbjct 6857111 TCTGGTGGAGGTCCATAGCAGTCCTGACATGC 6857080
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079846503800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |