Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq2543 163 1e-37 seq206 140 1e-30 seq116 129 2e-27 seq408 107 8e-21 seq46 89.7 2e-15 seq209 87.8 7e-15 seq749 84.2 9e-14 seq1 80.6 1e-12 seq745 77.0 1e-11 seq5 77.0 1e-11 >seq2543 Length=8359 Score = 163 bits (180), Expect = 1e-37 Identities = 114/130 (88%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || ||||||||||||||||||||||||||||||||| |||| ||||||||| Sbjct 56 AGAGCGTATATGTTGGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGA 115 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 ||||||||||||||||| || |||| ||||| ||||||||||||||||| | || ||| Sbjct 116 GGAAACTCTGGTGGAGGTCCGAAGCGATTCTGACGTGCAAATCGATCGTCTGACTTTGGT 175 Query 674 ATAGGGGCGA 683 |||||||||| Sbjct 176 ATAGGGGCGA 185 Score = 122 bits (134), Expect = 4e-25 Identities = 125/161 (78%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||| || |||||| | || ||| |||||| || ||||| ||||||| Sbjct 8017 GAGTCGGGTTGTTTGAGATTGCAGCCCAAAGAGGGTGGTAAACCTCATCTAAGGCTAAAT 8076 Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || | ||| |||||||||||| ||||||| |||| ||||| || |||| |||||| | Sbjct 8077 AT-GACCATGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGTTGCAAAGAACTTTGAA 8135 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| | ||| | |||| || Sbjct 8136 GAGAGAGTTCAAGAGGGCGTGAAACCGCTGAGATGGAAACG 8176 >seq206 Length=3845224 Score = 140 bits (154), Expect = 1e-30 Identities = 103/120 (86%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct 785659 TGTTAGGACCCGAACAATGGTGAACTATGCCTGGGCAGGGTGAAGCCAGAGGAAACTCTG 785600 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| || |||||| ||| ||||||||||| || || || ||| ||||||||||| Sbjct 785599 GTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCATCCAACCTGGATATAGGGGCGA 785540 >seq116 Length=5981949 Score = 129 bits (142), Expect = 2e-27 Identities = 101/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 563 CTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCT 622 ||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1608252 CTGTTCGGACCGGAAAGATGGTGAACTATGCCTGGGCAGGGTGAAGCCAGAGGAAACTCT 1608311 Query 623 GGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCG 682 |||||||| | |||||| ||| ||||||||| | ||||| | |||||||| || | Sbjct 1608312 GGTGGAGGTCCCTAGCGGTCCTGACGTGCAAATAGGTCGTCCGACCCGGGTATAGAGGTG 1608371 Query 683 A 683 | Sbjct 1608372 A 1608372 >seq408 Length=1995431 Score = 107 bits (118), Expect = 8e-21 Identities = 116/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| ||| ||||| ||||||| Sbjct 1771537 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTTCATCTAAGGCTAAAT 1771478 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| || || |||| ||||||| || | ||||| ||||||| |||||| | Sbjct 1771477 ACCGGCACAAGGCCAATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 1771418 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGG 193 |||||||| || || | ||||| ||| | ||| Sbjct 1771417 AGAGAGTTCAAGAGGGCATGAAACCGTTAAGAGG 1771384 >seq46 Length=17373732 Score = 89.7 bits (98), Expect = 2e-15 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 41 AGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATA 100 ||||| |||| ||||||||||||| | || |||| ||||| | | ||||| |||||||| Sbjct 9891880 AGTCGGGTTGCTTGGGAATGCAGCCCAAAGTGGGTAGTAAACTCCATCTAAGGCTAAATA 9891939 Query 101 TTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAA 160 | | ||||| || || ||||||| | | ||||| ||||||| |||||||| | Sbjct 9891940 CCGACAGGAGACTGAAAGTCAACAAGTACCTTAAGAGAAAGTTGAAAAGAACTTTGGAGA 9891999 Query 161 GAGAGTTAAAAA 172 |||| ||||| Sbjct 9892000 GAGACAGAAAAA 9892011 Score = 87.8 bits (96), Expect = 7e-15 Identities = 99/132 (75%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 41 AGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATA 100 ||||| |||| ||||||||||||||| || ||| |||||| | | |||| |||||||| Sbjct 9890007 AGTCGGGTTGCTTGGGAATGCAGCTCAAAGCGGGTGGTAAACTCCAGCTAAGGCTAAATA 9890066 Query 101 TTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAA 160 | | ||||| || || ||||||| | | ||||| ||||||| |||||| || Sbjct 9890067 CCGACAGGAGACTGAAAGTCAACAAGTACCTTAAGGGAAAGCTGAAAAGAACTTTG--AA 9890124 Query 161 GAGAGTTAAAAA 172 |||||| | ||| Sbjct 9890125 GAGAGTCAGAAA 9890136 >seq209 Length=3807062 Score = 87.8 bits (96), Expect = 7e-15 Identities = 85/108 (79%), Gaps = 1/108 (1%) Strand=Plus/Minus Query 573 CCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCT 632 || ||||||||| |||||||||| | | || ||||||||||||||||||||| ||| Sbjct 1563291 CCAAAAGATGGTTAACTATGCCT-AGCAAGGCAAAGCCAGAGGAAACTCTGGTGCAGGTC 1563233 Query 633 CGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGG 680 || | ||||||| | || |||||| ||| || |||||||||||| Sbjct 1563232 CGTAATGGTTCTGATATTCAGATCGATTGTCTGATCTGGGTATAGGGG 1563185 >seq749 Length=522645 Score = 84.2 bits (92), Expect = 9e-14 Identities = 94/123 (76%), Gaps = 7/123 (6%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCT-GAATAGGGTGAAGCCAGAGGAAACTCT 622 |||||||||| |||||||||||| |||||||| | |||||||||||| |||||| ||| Sbjct 313309 TGTTGGGACCTGAAAGATGGTGACCTATGCCTGGGTTAGGGTGAAGCCGGAGGAA--TCT 313252 Query 623 GGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATC----GATCGTCAAATTTGGGTATAGG 678 || |||| || || ||| ||| | || ||||| | || || | |||| ||||| Sbjct 313251 AGTAGAGGTCCGTAGTGGTCCTGACATGTAAATCAGTTGGTCATCCGACCTGGGCATAGG 313192 Query 679 GGC 681 ||| Sbjct 313191 GGC 313189 >seq1 Length=21314971 Score = 80.6 bits (88), Expect = 1e-12 Identities = 97/127 (76%), Gaps = 5/127 (4%) Strand=Plus/Plus Query 41 AGTCGAGTTGTTTGGGAATGCAGCTCTAAA-TGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||| |||| ||||||||||||| ||||| ||| |||||| | | ||||| | ||||| Sbjct 12900252 AGTCGGGTTGCTTGGGAATGCAGC-CTAAAGCGGGTGGTAAACTCCATCTAAGGTTAAAT 12900310 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTA-GAGTGATCGAAAGATGAAAAGCACTTTG-- 156 || ||| |||||| ||||| ||||||| | | ||||| ||||||| | | || Sbjct 12900311 ATCGGCAGGAGACCCATAGCCAACAAGTACCATAAAGGGAAAGTTGAAAAGAATTCTGAA 12900370 Query 157 GAAAGAG 163 ||||||| Sbjct 12900371 GAAAGAG 12900377 >seq745 Length=522037 Score = 77.0 bits (84), Expect = 1e-11 Identities = 95/129 (74%), Gaps = 1/129 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||| |||||| |||||||||||| | || |||| ||||| | | |||| ||||||| Sbjct 146946 GAGTTGAGTTGCTTGGGAATGCAGACCAAAGTGGGTAGTAAACTCCATCTATGGCTAAAT 146887 Query 100 -ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 | |||| ||||| ||| ||||||| | | ||||| ||||||| | |||| | Sbjct 146886 AACTGGCACAAGACCAGTAGTCAACAAGTACCATAAGAGAAAGTTGAAAAGAATTTTGAA 146827 Query 159 AAGAGAGTT 167 |||||||| Sbjct 146826 GAGAGAGTT 146818 >seq5 Length=16187737 Score = 77.0 bits (84), Expect = 1e-11 Identities = 73/92 (79%), Gaps = 1/92 (1%) Strand=Plus/Minus Query 561 AGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAAT-AGGGTGAAGCCAGAGGAAAC 619 || |||| |||||| |||||||| |||||| || | |||||||||||||||||||| Sbjct 6857171 AGGTGTTAGGACCCAAAAGATGGCAAACTATTCCCCAGGCAGGGTGAAGCCAGAGGAAAC 6857112 Query 620 TCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGC 651 ||||||||||| | ||| || ||| | ||| Sbjct 6857111 TCTGGTGGAGGTCCATAGCAGTCCTGACATGC 6857080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079846503800