Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= AAMG01000530.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq171 86.0 6e-15 seq3 84.2 2e-14 seq1002 80.6 3e-13 seq83 77.0 3e-12 seq788 75.2 1e-11 seq79 75.2 1e-11 seq57 73.4 4e-11 >seq171 Length=4388239 Score = 86.0 bits (94), Expect = 6e-15 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 12 GTGATATAGTTCCTAATATCTAAGTGGGGAGAGGATGATATTACTCCCAATATGGCA 68 ||||||| |||||||||||| | ||| |||||||||||||||||||||||||||||| Sbjct 1259867 GTGATATTGTTCCTAATATCCAGGTGAGGAGAGGATGATATTACTCCCAATATGGCA 1259811 >seq3 Length=16812482 Score = 84.2 bits (92), Expect = 2e-14 Identities = 78/98 (80%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 12 GTGATATAGTTCCTAATATCTAAGTGGGGAGAGGATGATATTACTCCCAATATGGCACAA 71 ||| |||||||||||||||| | |||||||||||||||||||||||||||| ||| | Sbjct 11869531 GTGTTATAGTTCCTAATATCCTTGGGGGGAGAGGATGATATTACTCCCAATATCGCAGGA 11869472 Query 72 ATTGTAAAACCCT--TTCGATATATTTCCTACAATCCA 107 | |||| | | || | ||||| |||||| ||||| Sbjct 11869471 AATGTACACCACTTCTGTGATATTGTTCCTAATATCCA 11869434 Score = 78.8 bits (86), Expect = 1e-12 Identities = 74/92 (80%), Gaps = 3/92 (3%) Strand=Plus/Minus Query 12 GTGATATAGTTCCTAATATCTAAGTGGGGAGA-GGATGATATTACTCCCAATATGGCACA 70 |||||||||||||||||||||| | ||||| |||| |||||||||||||||| ||| | Sbjct 11870205 GTGATATAGTTCCTAATATCTAGGGTGGGAGGTGGATAATATTACTCCCAATATCGCAAA 11870146 Query 71 AATTGTAAAA--CCCTTTCGATATATTTCCTA 100 | |||| || ||| | ||||| |||||| Sbjct 11870145 TAATGTACAATCCCCCTGTGATATTGTTCCTA 11870114 Score = 73.4 bits (80), Expect = 4e-11 Identities = 51/57 (89%), Gaps = 2/57 (4%) Strand=Plus/Minus Query 12 GTGATATAGTTCCTAATATCTAAGTGGGGAGAGGATGATATTACTCCCAATATGGCA 68 ||||||| ||| ||||||||| | |||||||||||||||||||||||||||| ||| Sbjct 11870565 GTGATATTGTTTCTAATATCT--GGGGGGAGAGGATGATATTACTCCCAATATCGCA 11870511 >seq1002 Length=103726 Score = 80.6 bits (88), Expect = 3e-13 Identities = 80/102 (78%), Gaps = 4/102 (4%) Strand=Plus/Plus Query 9 CCCGTGATATAGTTCCTAATATCTAAGTGGGGAGAGGATGATATTACTCCCAATATGGCA 68 || ||||||| |||||||||||||| | | | |||||||||| ||||||||||||| ||| Sbjct 43814 CCTGTGATATTGTTCCTAATATCTAGGGGAGAAGAGGATGATGTTACTCCCAATATTGCA 43873 Query 69 CAAATTGTAAAACCCTTTC---GATATATTTCCTACAATCCA 107 | ||| | |||||| | ||||| |||||| ||||| Sbjct 43874 GGGAATGT-ACACCCTTCCTGTGATATTTTTCCTGATATCCA 43914 >seq83 Length=10167762 Score = 77.0 bits (84), Expect = 3e-12 Identities = 53/60 (88%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 9 CCCGTGATATAGTTCCTAATATCTAAGTGGGGAGAGGATGATATTACTCCCAATATGGCA 68 || ||||||| ||||||||||| |||||||||||||| |||| |||||||||||| ||| Sbjct 4210104 CCTGTGATATTTTTCCTAATATCCAAGTGGGGAGAGGAAGATAGTACTCCCAATATTGCA 4210045 Score = 73.4 bits (80), Expect = 4e-11 Identities = 78/102 (76%), Gaps = 1/102 (1%) Strand=Plus/Minus Query 6 CGTCCCGTGATATAGTTCCTAATATCTAAGTGGGGAGAGGATGATATTACTCCCAATATG 65 || |||||||||| |||||||||||| | ||||||||| ||||||||||| |||| | Sbjct 4209430 CGCCCCGTGATATTGTTCCTAATATCCAGGTGGGGAGAAAATGATATTACTACCAAGAGC 4209371 Query 66 GCA-CAAATTGTAAAACCCTTTCGATATATTTCCTACAATCC 106 ||| ||| | || ||| | ||||| |||||| |||| Sbjct 4209370 GCAGGGAATGGACAACCCCCTGTGATATTGTTCCTAATATCC 4209329 >seq788 Length=392241 Score = 75.2 bits (82), Expect = 1e-11 Identities = 49/54 (91%), Gaps = 0/54 (0%) Strand=Plus/Minus Query 9 CCCGTGATATAGTTCCTAATATCTAAGTGGGGAGAGGATGATATTACTCCCAAT 62 || ||||||| |||||||||||| ||| ||| |||||||||||||||||||||| Sbjct 257592 CCTGTGATATTGTTCCTAATATCCAAGGGGGAAGAGGATGATATTACTCCCAAT 257539 >seq79 Length=7578656 Score = 75.2 bits (82), Expect = 1e-11 Identities = 60/70 (86%), Gaps = 2/70 (3%) Strand=Plus/Minus Query 9 CCCGTGATATAGTTCCTAATATCTAAGTG-GGGAGAGGATGATATTACTCCCAATATGGC 67 ||| |||||| |||||||||| || ||| |||| |||||||||||||||||||||| || Sbjct 3400691 CCCATGATATTATTCCTAATATTTA-GTGAGGGAAAGGATGATATTACTCCCAATATCGC 3400633 Query 68 ACAAATTGTA 77 |||| |||| Sbjct 3400632 ACAAGGTGTA 3400623 Score = 75.2 bits (82), Expect = 1e-11 Identities = 49/54 (91%), Gaps = 0/54 (0%) Strand=Plus/Minus Query 15 ATATAGTTCCTAATATCTAAGTGGGGAGAGGATGATATTACTCCCAATATGGCA 68 |||| |||||||||||| | | |||||||||||||||||||||||||||| ||| Sbjct 3404508 ATATTGTTCCTAATATCCAGGAGGGGAGAGGATGATATTACTCCCAATATCGCA 3404455 >seq57 Length=8566406 Score = 73.4 bits (80), Expect = 4e-11 Identities = 76/97 (78%), Gaps = 2/97 (2%) Strand=Plus/Plus Query 13 TGATATAGTTCCTAATATCTAAGTGGGGAGAGGATGATATTACTCCCAATATGGCACAAA 72 |||||| |||||||||||| | || |||| |||||| ||||||||||||||| ||| || Sbjct 6580271 TGATATTGTTCCTAATATCCAGGTAGGGACAGGATGGTATTACTCCCAATATTGCAGGAA 6580330 Query 73 TTGTA-AAACC-CTTTCGATATATTTCCTACAATCCA 107 |||| | ||| | | ||||| || ||| ||||| Sbjct 6580331 GTGTACACACCACCTGTGATATTGTTTCTAATATCCA 6580367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511964506240