Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= AAMG01000530.1
Length=191
Score E
Sequences producing significant alignments: (Bits) Value
seq171 86.0 6e-15
seq3 84.2 2e-14
seq1002 80.6 3e-13
seq83 77.0 3e-12
seq788 75.2 1e-11
seq79 75.2 1e-11
seq57 73.4 4e-11
>seq171
Length=4388239
Score = 86.0 bits (94), Expect = 6e-15
Identities = 53/57 (93%), Gaps = 0/57 (0%)
Strand=Plus/Minus
Query 12 GTGATATAGTTCCTAATATCTAAGTGGGGAGAGGATGATATTACTCCCAATATGGCA 68
||||||| |||||||||||| | ||| ||||||||||||||||||||||||||||||
Sbjct 1259867 GTGATATTGTTCCTAATATCCAGGTGAGGAGAGGATGATATTACTCCCAATATGGCA 1259811
>seq3
Length=16812482
Score = 84.2 bits (92), Expect = 2e-14
Identities = 78/98 (80%), Gaps = 2/98 (2%)
Strand=Plus/Minus
Query 12 GTGATATAGTTCCTAATATCTAAGTGGGGAGAGGATGATATTACTCCCAATATGGCACAA 71
||| |||||||||||||||| | |||||||||||||||||||||||||||| ||| |
Sbjct 11869531 GTGTTATAGTTCCTAATATCCTTGGGGGGAGAGGATGATATTACTCCCAATATCGCAGGA 11869472
Query 72 ATTGTAAAACCCT--TTCGATATATTTCCTACAATCCA 107
| |||| | | || | ||||| |||||| |||||
Sbjct 11869471 AATGTACACCACTTCTGTGATATTGTTCCTAATATCCA 11869434
Score = 78.8 bits (86), Expect = 1e-12
Identities = 74/92 (80%), Gaps = 3/92 (3%)
Strand=Plus/Minus
Query 12 GTGATATAGTTCCTAATATCTAAGTGGGGAGA-GGATGATATTACTCCCAATATGGCACA 70
|||||||||||||||||||||| | ||||| |||| |||||||||||||||| ||| |
Sbjct 11870205 GTGATATAGTTCCTAATATCTAGGGTGGGAGGTGGATAATATTACTCCCAATATCGCAAA 11870146
Query 71 AATTGTAAAA--CCCTTTCGATATATTTCCTA 100
| |||| || ||| | ||||| ||||||
Sbjct 11870145 TAATGTACAATCCCCCTGTGATATTGTTCCTA 11870114
Score = 73.4 bits (80), Expect = 4e-11
Identities = 51/57 (89%), Gaps = 2/57 (4%)
Strand=Plus/Minus
Query 12 GTGATATAGTTCCTAATATCTAAGTGGGGAGAGGATGATATTACTCCCAATATGGCA 68
||||||| ||| ||||||||| | |||||||||||||||||||||||||||| |||
Sbjct 11870565 GTGATATTGTTTCTAATATCT--GGGGGGAGAGGATGATATTACTCCCAATATCGCA 11870511
>seq1002
Length=103726
Score = 80.6 bits (88), Expect = 3e-13
Identities = 80/102 (78%), Gaps = 4/102 (4%)
Strand=Plus/Plus
Query 9 CCCGTGATATAGTTCCTAATATCTAAGTGGGGAGAGGATGATATTACTCCCAATATGGCA 68
|| ||||||| |||||||||||||| | | | |||||||||| ||||||||||||| |||
Sbjct 43814 CCTGTGATATTGTTCCTAATATCTAGGGGAGAAGAGGATGATGTTACTCCCAATATTGCA 43873
Query 69 CAAATTGTAAAACCCTTTC---GATATATTTCCTACAATCCA 107
| ||| | |||||| | ||||| |||||| |||||
Sbjct 43874 GGGAATGT-ACACCCTTCCTGTGATATTTTTCCTGATATCCA 43914
>seq83
Length=10167762
Score = 77.0 bits (84), Expect = 3e-12
Identities = 53/60 (88%), Gaps = 0/60 (0%)
Strand=Plus/Minus
Query 9 CCCGTGATATAGTTCCTAATATCTAAGTGGGGAGAGGATGATATTACTCCCAATATGGCA 68
|| ||||||| ||||||||||| |||||||||||||| |||| |||||||||||| |||
Sbjct 4210104 CCTGTGATATTTTTCCTAATATCCAAGTGGGGAGAGGAAGATAGTACTCCCAATATTGCA 4210045
Score = 73.4 bits (80), Expect = 4e-11
Identities = 78/102 (76%), Gaps = 1/102 (1%)
Strand=Plus/Minus
Query 6 CGTCCCGTGATATAGTTCCTAATATCTAAGTGGGGAGAGGATGATATTACTCCCAATATG 65
|| |||||||||| |||||||||||| | ||||||||| ||||||||||| |||| |
Sbjct 4209430 CGCCCCGTGATATTGTTCCTAATATCCAGGTGGGGAGAAAATGATATTACTACCAAGAGC 4209371
Query 66 GCA-CAAATTGTAAAACCCTTTCGATATATTTCCTACAATCC 106
||| ||| | || ||| | ||||| |||||| ||||
Sbjct 4209370 GCAGGGAATGGACAACCCCCTGTGATATTGTTCCTAATATCC 4209329
>seq788
Length=392241
Score = 75.2 bits (82), Expect = 1e-11
Identities = 49/54 (91%), Gaps = 0/54 (0%)
Strand=Plus/Minus
Query 9 CCCGTGATATAGTTCCTAATATCTAAGTGGGGAGAGGATGATATTACTCCCAAT 62
|| ||||||| |||||||||||| ||| ||| ||||||||||||||||||||||
Sbjct 257592 CCTGTGATATTGTTCCTAATATCCAAGGGGGAAGAGGATGATATTACTCCCAAT 257539
>seq79
Length=7578656
Score = 75.2 bits (82), Expect = 1e-11
Identities = 60/70 (86%), Gaps = 2/70 (3%)
Strand=Plus/Minus
Query 9 CCCGTGATATAGTTCCTAATATCTAAGTG-GGGAGAGGATGATATTACTCCCAATATGGC 67
||| |||||| |||||||||| || ||| |||| |||||||||||||||||||||| ||
Sbjct 3400691 CCCATGATATTATTCCTAATATTTA-GTGAGGGAAAGGATGATATTACTCCCAATATCGC 3400633
Query 68 ACAAATTGTA 77
|||| ||||
Sbjct 3400632 ACAAGGTGTA 3400623
Score = 75.2 bits (82), Expect = 1e-11
Identities = 49/54 (91%), Gaps = 0/54 (0%)
Strand=Plus/Minus
Query 15 ATATAGTTCCTAATATCTAAGTGGGGAGAGGATGATATTACTCCCAATATGGCA 68
|||| |||||||||||| | | |||||||||||||||||||||||||||| |||
Sbjct 3404508 ATATTGTTCCTAATATCCAGGAGGGGAGAGGATGATATTACTCCCAATATCGCA 3404455
>seq57
Length=8566406
Score = 73.4 bits (80), Expect = 4e-11
Identities = 76/97 (78%), Gaps = 2/97 (2%)
Strand=Plus/Plus
Query 13 TGATATAGTTCCTAATATCTAAGTGGGGAGAGGATGATATTACTCCCAATATGGCACAAA 72
|||||| |||||||||||| | || |||| |||||| ||||||||||||||| ||| ||
Sbjct 6580271 TGATATTGTTCCTAATATCCAGGTAGGGACAGGATGGTATTACTCCCAATATTGCAGGAA 6580330
Query 73 TTGTA-AAACC-CTTTCGATATATTTCCTACAATCCA 107
|||| | ||| | | ||||| || ||| |||||
Sbjct 6580331 GTGTACACACCACCTGTGATATTGTTTCTAATATCCA 6580367
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511964506240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |