Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq2543 226 5e-57
seq92 161 2e-37
seq578 152 8e-35
seq59 152 8e-35
seq3 129 9e-28
seq35 116 6e-24
seq674 107 3e-21
seq281 73.4 6e-11
>seq2543
Length=8359
Score = 226 bits (250), Expect = 5e-57
Identities = 200/244 (82%), Gaps = 7/244 (3%)
Strand=Plus/Minus
Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76
||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| |||
Sbjct 6558 CAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TCA 6500
Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC--ACCAACCATAGTC 134
| |||| |||| | || | |||||||||||||| | || || || ||
Sbjct 6499 A-CTTCATGCGGCTAAACACCGCTTGTCCCTCTAAGAAGTTGTCTGGACAAA--ATTATC 6443
Query 135 GATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCAC 194
| | |||||||| ||| || |||||| ||||||||||||| |||||||||||||||
Sbjct 6442 CA-GTAACTATTTAGTAGGCTAGAGTCTCGCTCGTTATCGGAATAAACCAGACAAATCAC 6384
Query 195 TCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATC 254
||||||||||||||||||||||||||||||| ||| |||||| ||||||||| ||||||
Sbjct 6383 TCCACCAACTAAGAACGGCCATGCACCACCAACCACCGAATCATGAAAGAGCTCTCAATC 6324
Query 255 TGTC 258
||||
Sbjct 6323 TGTC 6320
>seq92
Length=6912755
Score = 161 bits (178), Expect = 2e-37
Identities = 191/251 (76%), Gaps = 17/251 (7%)
Strand=Plus/Plus
Query 19 GTGTAGCGCGCGTGCGGC-CCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 77
|||||| |||| ||| || ||||| | ||||||||||||||||||||||||||| |||
Sbjct 2075243 GTGTAGTGCGCATGCAGCTCCAGACCC-CTAAGGGCATCACAGACCTGTTATTGCTTCA- 2075300
Query 78 ACTTCCATTGGC--TGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCA---CCAAC----C 128
|| ||| || | |||| | |||||||||||||| | | || | |
Sbjct 2075301 ---TCTCGGGGCACTGAATGCCACTTGTCCCTCTAAGAAGTTGGAGAATGCCGGCTGCTC 2075357
Query 129 ATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187
| | ||| || |||| ||| | | | ||||||||| |||||||||||||||||||
Sbjct 2075358 AGGGATCG-TGTAGCTAGCTAGTATGCCAGAGTCTCGTTCCTTATCGGAATTAACCAGAC 2075416
Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247
| ||| ||||||||||||| ||| |||||||||| |||||||||||| ||||||||||
Sbjct 2075417 AGATCGCTCCACCAACTAACAACAGCCATGCACCGCCACCCATAGAACTGAGAAAGAGCT 2075476
Query 248 ATCAATCTGTC 258
||||||||||
Sbjct 2075477 GTCAATCTGTC 2075487
>seq578
Length=1082138
Score = 152 bits (168), Expect = 8e-35
Identities = 104/117 (89%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||| |||||| | | |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 562087 CTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 562146
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|||||||| ||||||||||||||||||| |||| | |||||||||||||||||||
Sbjct 562147 ACTAAGAATGGCCATGCACCACCACCCACTGAATTGAAAAAGAGCTATCAATCTGTC 562203
>seq59
Length=8354095
Score = 152 bits (168), Expect = 8e-35
Identities = 104/117 (89%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||| |||||| | || ||||| || ||||||||||||||||||||||| ||||||||
Sbjct 1966681 CTAGTTAGCATTTCAAAGTCTCATTTATTATCGGAATTAACCAGACAAATTGCTCCACCA 1966622
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1966621 ACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCTATCAATCTGTC 1966565
>seq3
Length=16812482
Score = 129 bits (142), Expect = 9e-28
Identities = 101/120 (84%), Gaps = 3/120 (3%)
Strand=Plus/Plus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||| |||||| | | ||||| || |||||| |||||||||||||||||||||||||||
Sbjct 9010530 CTAGTTAGCATGCCAGAGTCTCATTTGTTATCAGAATTAACCAGACAAATCACTCCACCA 9010589
Query 202 ACTAAGAACGGCCATG---CACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|| ||||| ||||||| |||||||||||| |||| ||||| |||||||||||||||
Sbjct 9010590 ACCAAGAAGGGCCATGTGCCACCACCACCCACGGAATTGAGAAAAAGCTATCAATCTGTC 9010649
>seq35
Length=10415718
Score = 116 bits (128), Expect = 6e-24
Identities = 157/212 (74%), Gaps = 10/212 (5%)
Strand=Plus/Plus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
|||||| ||| | | ||| |||| | |||||||||| |||||||||||||||||| ||
Sbjct 9695706 GTCAGTAAAGCACACATGCAGCCCTGGACATCTAAGGTTATCACAGACCTGTTATTG-CT 9695764
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAA---GCCAGCCACCAACC-AT 130
||| | || |||||| | |||| | ||||||||||||| | | | || ||| |
Sbjct 9695765 CAATC-TCGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCT 9695823
Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187
| | | | | ||| |||||| | | |||||||| ||| | ||| ||||||||
Sbjct 9695824 CGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTT-TTTAACAGAAGTAACCAGAT 9695882
Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCA 219
|||| | ||||||||||||||| |||||||||
Sbjct 9695883 AAATTAGTCCACCAACTAAGAATGGCCATGCA 9695914
>seq674
Length=734976
Score = 107 bits (118), Expect = 3e-21
Identities = 167/231 (72%), Gaps = 11/231 (5%)
Strand=Plus/Minus
Query 36 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAG 95
|||||| || ||||| ||||| |||| ||||| ||| |||| || | |||| | | |
Sbjct 68873 CCCAGA-CACCTAAGAGCATCTCAGAATTGTTACTGC-TCAATCTGA-AGTGGCCGAATG 68817
Query 96 CCAATAGTCCC-TCTAAGAAGCCA---GCCACCAACCA-TAGTCGATGGGGCTAT---TT 147
||| | ||||| | |||||| | | ||| ||| | | | ||| | | ||
Sbjct 68816 CCACTTGTCCCCTATAAGAAACTGAGGGACACTAACGACTTGGGGATTGCAAAACACATT 68757
Query 148 AGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAG 207
|||| | | |||| ||| ||||| ||||||||||| |||||||||| |||||||||
Sbjct 68756 AGCATGCCAGAGTCTTGTTTTTTATCAGAATTAACCAGGCAAATCACTCAGCCAACTAAG 68697
Query 208 AACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|| |||||| || |||| |||| | || |||||||| ||||||||||||
Sbjct 68696 AAGGGCCATTCATCACCTCCCACATAAGTGAGAAAGAGTTATCAATCTGTC 68646
>seq281
Length=3970088
Score = 73.4 bits (80), Expect = 6e-11
Identities = 59/69 (86%), Gaps = 2/69 (3%)
Strand=Plus/Minus
Query 48 AAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCT 107
|||||||||||||||||||||||| ||||| | || |||||| | |||| | ||||||
Sbjct 2946050 AAGGGCATCACAGACCTGTTATTG-CTCAATC-TCGGGTGGCTGAACGCCACTTGTCCCT 2945993
Query 108 CTAAGAAGC 116
|||||||||
Sbjct 2945992 CTAAGAAGC 2945984
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796744762836
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |