Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq2543 226 5e-57 seq92 161 2e-37 seq578 152 8e-35 seq59 152 8e-35 seq3 129 9e-28 seq35 116 6e-24 seq674 107 3e-21 seq281 73.4 6e-11 >seq2543 Length=8359 Score = 226 bits (250), Expect = 5e-57 Identities = 200/244 (82%), Gaps = 7/244 (3%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 ||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| ||| Sbjct 6558 CAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TCA 6500 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC--ACCAACCATAGTC 134 | |||| |||| | || | |||||||||||||| | || || || || Sbjct 6499 A-CTTCATGCGGCTAAACACCGCTTGTCCCTCTAAGAAGTTGTCTGGACAAA--ATTATC 6443 Query 135 GATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCAC 194 | | |||||||| ||| || |||||| ||||||||||||| ||||||||||||||| Sbjct 6442 CA-GTAACTATTTAGTAGGCTAGAGTCTCGCTCGTTATCGGAATAAACCAGACAAATCAC 6384 Query 195 TCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATC 254 ||||||||||||||||||||||||||||||| ||| |||||| ||||||||| |||||| Sbjct 6383 TCCACCAACTAAGAACGGCCATGCACCACCAACCACCGAATCATGAAAGAGCTCTCAATC 6324 Query 255 TGTC 258 |||| Sbjct 6323 TGTC 6320 >seq92 Length=6912755 Score = 161 bits (178), Expect = 2e-37 Identities = 191/251 (76%), Gaps = 17/251 (7%) Strand=Plus/Plus Query 19 GTGTAGCGCGCGTGCGGC-CCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 77 |||||| |||| ||| || ||||| | ||||||||||||||||||||||||||| ||| Sbjct 2075243 GTGTAGTGCGCATGCAGCTCCAGACCC-CTAAGGGCATCACAGACCTGTTATTGCTTCA- 2075300 Query 78 ACTTCCATTGGC--TGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCA---CCAAC----C 128 || ||| || | |||| | |||||||||||||| | | || | | Sbjct 2075301 ---TCTCGGGGCACTGAATGCCACTTGTCCCTCTAAGAAGTTGGAGAATGCCGGCTGCTC 2075357 Query 129 ATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | ||| || |||| ||| | | | ||||||||| ||||||||||||||||||| Sbjct 2075358 AGGGATCG-TGTAGCTAGCTAGTATGCCAGAGTCTCGTTCCTTATCGGAATTAACCAGAC 2075416 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 | ||| ||||||||||||| ||| |||||||||| |||||||||||| |||||||||| Sbjct 2075417 AGATCGCTCCACCAACTAACAACAGCCATGCACCGCCACCCATAGAACTGAGAAAGAGCT 2075476 Query 248 ATCAATCTGTC 258 |||||||||| Sbjct 2075477 GTCAATCTGTC 2075487 >seq578 Length=1082138 Score = 152 bits (168), Expect = 8e-35 Identities = 104/117 (89%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | |||||||||||||||||||||||||||||||||| |||||||| Sbjct 562087 CTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 562146 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||| ||||||||||||||||||| |||| | ||||||||||||||||||| Sbjct 562147 ACTAAGAATGGCCATGCACCACCACCCACTGAATTGAAAAAGAGCTATCAATCTGTC 562203 >seq59 Length=8354095 Score = 152 bits (168), Expect = 8e-35 Identities = 104/117 (89%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | || ||||| || ||||||||||||||||||||||| |||||||| Sbjct 1966681 CTAGTTAGCATTTCAAAGTCTCATTTATTATCGGAATTAACCAGACAAATTGCTCCACCA 1966622 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 1966621 ACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCTATCAATCTGTC 1966565 >seq3 Length=16812482 Score = 129 bits (142), Expect = 9e-28 Identities = 101/120 (84%), Gaps = 3/120 (3%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | ||||| || |||||| ||||||||||||||||||||||||||| Sbjct 9010530 CTAGTTAGCATGCCAGAGTCTCATTTGTTATCAGAATTAACCAGACAAATCACTCCACCA 9010589 Query 202 ACTAAGAACGGCCATG---CACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 || ||||| ||||||| |||||||||||| |||| ||||| ||||||||||||||| Sbjct 9010590 ACCAAGAAGGGCCATGTGCCACCACCACCCACGGAATTGAGAAAAAGCTATCAATCTGTC 9010649 >seq35 Length=10415718 Score = 116 bits (128), Expect = 6e-24 Identities = 157/212 (74%), Gaps = 10/212 (5%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||| ||| | | ||| |||| | |||||||||| |||||||||||||||||| || Sbjct 9695706 GTCAGTAAAGCACACATGCAGCCCTGGACATCTAAGGTTATCACAGACCTGTTATTG-CT 9695764 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAA---GCCAGCCACCAACC-AT 130 ||| | || |||||| | |||| | ||||||||||||| | | | || ||| | Sbjct 9695765 CAATC-TCGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCT 9695823 Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | | | | ||| |||||| | | |||||||| ||| | ||| |||||||| Sbjct 9695824 CGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTT-TTTAACAGAAGTAACCAGAT 9695882 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCA 219 |||| | ||||||||||||||| ||||||||| Sbjct 9695883 AAATTAGTCCACCAACTAAGAATGGCCATGCA 9695914 >seq674 Length=734976 Score = 107 bits (118), Expect = 3e-21 Identities = 167/231 (72%), Gaps = 11/231 (5%) Strand=Plus/Minus Query 36 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAG 95 |||||| || ||||| ||||| |||| ||||| ||| |||| || | |||| | | | Sbjct 68873 CCCAGA-CACCTAAGAGCATCTCAGAATTGTTACTGC-TCAATCTGA-AGTGGCCGAATG 68817 Query 96 CCAATAGTCCC-TCTAAGAAGCCA---GCCACCAACCA-TAGTCGATGGGGCTAT---TT 147 ||| | ||||| | |||||| | | ||| ||| | | | ||| | | || Sbjct 68816 CCACTTGTCCCCTATAAGAAACTGAGGGACACTAACGACTTGGGGATTGCAAAACACATT 68757 Query 148 AGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAG 207 |||| | | |||| ||| ||||| ||||||||||| |||||||||| ||||||||| Sbjct 68756 AGCATGCCAGAGTCTTGTTTTTTATCAGAATTAACCAGGCAAATCACTCAGCCAACTAAG 68697 Query 208 AACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 || |||||| || |||| |||| | || |||||||| |||||||||||| Sbjct 68696 AAGGGCCATTCATCACCTCCCACATAAGTGAGAAAGAGTTATCAATCTGTC 68646 >seq281 Length=3970088 Score = 73.4 bits (80), Expect = 6e-11 Identities = 59/69 (86%), Gaps = 2/69 (3%) Strand=Plus/Minus Query 48 AAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCT 107 |||||||||||||||||||||||| ||||| | || |||||| | |||| | |||||| Sbjct 2946050 AAGGGCATCACAGACCTGTTATTG-CTCAATC-TCGGGTGGCTGAACGCCACTTGTCCCT 2945993 Query 108 CTAAGAAGC 116 ||||||||| Sbjct 2945992 CTAAGAAGC 2945984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796744762836