Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq2543 356 4e-96
seq92 268 2e-69
seq22 91.5 3e-16
seq35 82.4 1e-13
seq603 75.2 2e-11
>seq2543
Length=8359
Score = 356 bits (394), Expect = 4e-96
Identities = 238/263 (90%), Gaps = 4/263 (2%)
Strand=Plus/Minus
Query 35 CAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAG 94
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2450 CAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAG 2391
Query 95 TGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATC 154
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 2390 TGGGTGAACAATCCAACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCGACATC 2331
Query 155 GAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGT 214
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2330 GAAGGATCAAAAAGCAACGTCGCTATGGACGCTTGGCTGCCACAAGCCAGTTATCCCTGT 2271
Query 215 GGTAACTTTTCTGGCACCTCTAGCCTCAAA-TTTCGAGGGA---CTAAAGGATCGATAGG 270
||||||||||||| ||||||| || ||| ||| | | | ||||||||||||||
Sbjct 2270 GGTAACTTTTCTGACACCTCTTGCTAGAAACCTTCTAAAAAATTCAAAAGGATCGATAGG 2211
Query 271 CCACACTTTCATGGTTTGTATTC 293
|||| ||||| ||| |||||||
Sbjct 2210 CCACGCTTTCGCGGTCTGTATTC 2188
>seq92
Length=6912755
Score = 268 bits (296), Expect = 2e-69
Identities = 202/238 (85%), Gaps = 0/238 (0%)
Strand=Plus/Minus
Query 57 CTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTA 116
|||| ||| ||||| |||||||||||||||||||| | || ||||||||||| ||||
Sbjct 2070209 CTCAGGACAATCTAATCCCAGCTCACGTTCCCTATTCATAGGAGAACAATCCAATGCTTG 2070150
Query 117 CCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCG 176
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2070149 GTGAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCG 2070090
Query 177 CTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTA 236
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2070089 CTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCT 2070030
Query 237 GCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294
|| | ||| | || | |||||||| || || |||||||||||| ||||||||
Sbjct 2070029 GCTTAAAACCCAAAAGGTCAGAAGGATCGTGAGTCCTCACTTTCATGGTCTGTATTCA 2069972
>seq22
Length=11589503
Score = 91.5 bits (100), Expect = 3e-16
Identities = 61/68 (90%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 138 TAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCAC 197
||||||||||||||||| ||| |||||||||||| || ||||||||| |||||| ||||
Sbjct 2025734 TAGGAAGAGCCGACATCAAAGCATCAAAAAGCAAGGTTGCTATGAACACTTGGCCACCAC 2025793
Query 198 AAGCCAGT 205
||||||||
Sbjct 2025794 AAGCCAGT 2025801
>seq35
Length=10415718
Score = 82.4 bits (90), Expect = 1e-13
Identities = 68/82 (83%), Gaps = 1/82 (1%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||| ||| | |||||||| | | || ||||||||||||||||||||||||||||
Sbjct 3480403 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTT 3480462
Query 60 ATGACGGTCTAAACCCAGCTCA 81
|||| ||||||||||||||||
Sbjct 3480463 GTGACAGTCTAAACCCAGCTCA 3480484
>seq603
Length=1034217
Score = 75.2 bits (82), Expect = 2e-11
Identities = 67/84 (80%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 118 CGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGC 177
||| ||||||||| ||||||||||||||| ||| ||||||||||||| | || | |
Sbjct 218304 CGAGTTCTGCTTCACAATGATAGGAAGAGCCAACACTGAAGGATCAAAAATCCACATTGT 218245
Query 178 TATGAACGCTTGGCTGCCACAAGC 201
|||||| |||||| |||||||
Sbjct 218244 TATGAAATCTTGGCCAACACAAGC 218221
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854338859136
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |