Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq2543 356 4e-96 seq92 268 2e-69 seq22 91.5 3e-16 seq35 82.4 1e-13 seq603 75.2 2e-11 >seq2543 Length=8359 Score = 356 bits (394), Expect = 4e-96 Identities = 238/263 (90%), Gaps = 4/263 (2%) Strand=Plus/Minus Query 35 CAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAG 94 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 2450 CAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAG 2391 Query 95 TGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATC 154 ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 2390 TGGGTGAACAATCCAACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCGACATC 2331 Query 155 GAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGT 214 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 2330 GAAGGATCAAAAAGCAACGTCGCTATGGACGCTTGGCTGCCACAAGCCAGTTATCCCTGT 2271 Query 215 GGTAACTTTTCTGGCACCTCTAGCCTCAAA-TTTCGAGGGA---CTAAAGGATCGATAGG 270 ||||||||||||| ||||||| || ||| ||| | | | |||||||||||||| Sbjct 2270 GGTAACTTTTCTGACACCTCTTGCTAGAAACCTTCTAAAAAATTCAAAAGGATCGATAGG 2211 Query 271 CCACACTTTCATGGTTTGTATTC 293 |||| ||||| ||| ||||||| Sbjct 2210 CCACGCTTTCGCGGTCTGTATTC 2188 >seq92 Length=6912755 Score = 268 bits (296), Expect = 2e-69 Identities = 202/238 (85%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 57 CTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTA 116 |||| ||| ||||| |||||||||||||||||||| | || ||||||||||| |||| Sbjct 2070209 CTCAGGACAATCTAATCCCAGCTCACGTTCCCTATTCATAGGAGAACAATCCAATGCTTG 2070150 Query 117 CCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCG 176 |||||||||||| |||||||||||||||||||||||||||||||||||| |||||| Sbjct 2070149 GTGAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCG 2070090 Query 177 CTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTA 236 ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 2070089 CTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCT 2070030 Query 237 GCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 || | ||| | || | |||||||| || || |||||||||||| |||||||| Sbjct 2070029 GCTTAAAACCCAAAAGGTCAGAAGGATCGTGAGTCCTCACTTTCATGGTCTGTATTCA 2069972 >seq22 Length=11589503 Score = 91.5 bits (100), Expect = 3e-16 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 138 TAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCAC 197 ||||||||||||||||| ||| |||||||||||| || ||||||||| |||||| |||| Sbjct 2025734 TAGGAAGAGCCGACATCAAAGCATCAAAAAGCAAGGTTGCTATGAACACTTGGCCACCAC 2025793 Query 198 AAGCCAGT 205 |||||||| Sbjct 2025794 AAGCCAGT 2025801 >seq35 Length=10415718 Score = 82.4 bits (90), Expect = 1e-13 Identities = 68/82 (83%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || |||||||||||||||||||||||||||| Sbjct 3480403 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTT 3480462 Query 60 ATGACGGTCTAAACCCAGCTCA 81 |||| |||||||||||||||| Sbjct 3480463 GTGACAGTCTAAACCCAGCTCA 3480484 >seq603 Length=1034217 Score = 75.2 bits (82), Expect = 2e-11 Identities = 67/84 (80%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 118 CGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGC 177 ||| ||||||||| ||||||||||||||| ||| ||||||||||||| | || | | Sbjct 218304 CGAGTTCTGCTTCACAATGATAGGAAGAGCCAACACTGAAGGATCAAAAATCCACATTGT 218245 Query 178 TATGAACGCTTGGCTGCCACAAGC 201 |||||| |||||| ||||||| Sbjct 218244 TATGAAATCTTGGCCAACACAAGC 218221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854338859136