Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq2543 203 6e-50 seq92 93.3 8e-17 seq36 89.7 1e-15 >seq2543 Length=8359 Score = 203 bits (224), Expect = 6e-50 Identities = 203/258 (79%), Gaps = 4/258 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | ||||| |||||| ||| |||||||||||||||| Sbjct 6462 CTTCTTAGAGGGACAAGCGGTGTTTAGCCGCATGAAGTT-GAG-CAATAACAGGTCTGTG 6519 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||| || || || | | | | Sbjct 6520 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGGAGGAATCAGCGTGCTG-TAA 6578 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 || | ||| ||||| ||||| | | ||| || |||| | ||||| | | |||| Sbjct 6579 CCATTACCGAAAGGTACTGGTAACCCCTTGAAAATCCTCCGTGATCGGGATCGGGAATTG 6638 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | ||| |||||||||| ||||||||| | | ||||||||| | |||||||| Sbjct 6639 CAATTATTTCCCTTGAACGAGGAATTCCTAGTAAGTGTGAGTCATCAGCTCACGTTGATT 6698 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 6699 ACGTCCCTGCCCTTTGTA 6716 >seq92 Length=6912755 Score = 93.3 bits (102), Expect = 8e-17 Identities = 147/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 110 TGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGG-GCCGCACGCGCGCTACACT 168 ||| ||||||||||||||||||||||||||| || |||| || ||| |||| |||||| Sbjct 2075300 TGAAGCAATAACAGGTCTGTGATGCCCTTAGGGGT-CTGGAGCTGCATGCGCACTACACC 2075242 Query 169 GACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTG 228 || | | | || | | || ||| | ||| ||||| || | || | | Sbjct 2075241 AACTGGCTCGGTGTGTGCCTACCCGATGCCAGCAGGCGCTGGTAAACTGTTGAACCCCAT 2075182 Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288 ||||| ||||||| | | |||||||||||| | | | | |||| ||| | |||||| || Sbjct 2075181 TCGTGATGGGGATCGGGGATTGCAATTATTCCCCATGACCGAGAAATTTCCAGTAAGTGC 2075122 Query 289 GTGTCATCAGCACGCGTTGATTACGTCC 316 ||||| | | || ||||||| |||| Sbjct 2075121 TGGTCATAAACTTGCATTGATTAAGTCC 2075094 >seq36 Length=10367870 Score = 89.7 bits (98), Expect = 1e-15 Identities = 126/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 132 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCAC 191 ||||||||||| | | |||| ||||||| ||||||||||| | || || || | | | Sbjct 1933591 TGCCCTTAGATATCCGGGGCTGCACGCGGGCTACACTGACTGGCTCAGCGTGTGCCTACC 1933532 Query 192 CTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGC 251 | ||||| ||| ||||| | | || | | ||||| | ||||| | | ||||| Sbjct 1933531 CCACGCCGGCAGGCGCAGGTAACCACTTGAACCCCATTCGTGATAGGGATCGGGGATTGC 1933472 Query 252 AATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 ||||||| | | | ||||| |||| | ||||| ||| ||||| ||| ||||||| Sbjct 1933471 AATTATTCCCCATGAACGAAGAATTCTCAGTAAATGCGGGTCATAAGCTTGCGTTGA 1933415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947132218368