Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq2543 104 4e-20 seq113 95.1 2e-17 seq444 86.0 1e-14 seq56 84.2 4e-14 >seq2543 Length=8359 Score = 104 bits (114), Expect = 4e-20 Identities = 93/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 2482 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 2539 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 2540 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 2593 >seq113 Length=6062217 Score = 95.1 bits (104), Expect = 2e-17 Identities = 91/114 (80%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 440519 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 440576 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| ||||||| |||||||||||||| ||||||||| Sbjct 440577 GGGGCGAAGCTACCATCTGTGGGATTATAACTGAACGCCTCTAAATCAGAATCC 440630 Score = 84.2 bits (92), Expect = 4e-14 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 31 TTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGG 90 ||||| | || | || |||| || || || |||||||||||||||| |||||||| Sbjct 4588341 TTGGTGTATGTGCTTGGCTGAGGAGCCAATGGGGCGAAGCTACCATCTGTGGGATTATGA 4588400 Query 91 CTGAACGCCTCTAAGTCAGAATCC 114 |||||||||||||||||||||||| Sbjct 4588401 CTGAACGCCTCTAAGTCAGAATCC 4588424 >seq444 Length=1760635 Score = 86.0 bits (94), Expect = 1e-14 Identities = 76/94 (81%), Gaps = 1/94 (1%) Strand=Plus/Plus Query 21 TTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGC 80 |||||| | ||||| |||| | || |||| || || || |||||||||||||||| Sbjct 831217 TTCAGAC-ATTTGGTGTTTGTGCTTGGCTGAGGAGCCAATGGGGCGAAGCTACCATCTGT 831275 Query 81 TGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 |||||||| | |||||||||||||||||||||| Sbjct 831276 GGGATTATGACCGAACGCCTCTAAGTCAGAATCC 831309 >seq56 Length=8603470 Score = 84.2 bits (92), Expect = 4e-14 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 31 TTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGG 90 ||||| | || | || |||| || || || |||||||||||||||| |||||||| Sbjct 988468 TTGGTGTATGTGCTTGGCTGAGGAGCCAATGGGGCGAAGCTACCATCTGTGGGATTATGA 988409 Query 91 CTGAACGCCTCTAAGTCAGAATCC 114 |||||||||||||||||||||||| Sbjct 988408 CTGAACGCCTCTAAGTCAGAATCC 988385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819143209984