Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq2543 363 5e-98
seq228 136 1e-29
seq106 125 2e-26
seq433 77.0 1e-11
>seq2543
Length=8359
Score = 363 bits (402), Expect = 5e-98
Identities = 389/504 (77%), Gaps = 10/504 (2%)
Strand=Plus/Minus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
|||| |||||| || || | | |||||| | || || ||||| | ||||||||||
Sbjct 5607 GTACCCATTCCGATAACCGGCCTACAAAGAGAACGGTCTCGTTATTTTTCGTCACTACCT 5548
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
|| | | | || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5547 CCTCATTCTGAGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 5488
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180
|||||||||||||||||||| ||||||||| |||| |||||||||||| |||||||||
Sbjct 5487 TCTCAGGCTCCCTCTCCGGAGTCGAACCCTTATTCTCCGTTACCCGTTACAACCATGGTA 5428
Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240
||| || ||||||||||||||||||| |||||| | |||| || |||||||
Sbjct 5427 GGCACATAAACTACCATCGAAAGTTGATAAGGCAGACACTTGATAGATATGTCGCCGGTA 5368
Query 241 CAAGGCCATGCGATTCGTTA-AGTTATTATGAATCACCAAGGAGCC--CCGA-AGGGCGT 296
|||| ||||||||| | | || |||| || ||||||| | | | | | ||
Sbjct 5367 CAAGACCATGCGATCAGCAATAGCTATTCAGAGTCACCAATTAACGGGCTTATAACCCGA 5308
Query 297 TGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTA-GCATGTATTAGC 355
| | |||| |||||||| || | | | ||| ||||||| | ||| ||||||||||||
Sbjct 5307 TTGGTTTTAATCTAATAGATGCGCTCGTTCAAAAGTCGGAGCTTTGGTGCATGTATTAGC 5248
Query 356 TCTAGAATTACCACGGTTATCCATGTAG--TAAGGTACTATCAAATAAACGATAACTGAT 413
||||||||| |||| |||||||| || | ||| || ||||| || | ||| ||| |
Sbjct 5247 TCTAGAATTGCCACAGTTATCCACGTTGGATAATCAAC-ATCAAGTACATTATAGCTGTT 5189
Query 414 TTAATGAGCCATTCGCAGTTTCACTGT-ATAGATTGCTTATA-CTTAGACATGCATGGCT 471
||||||||| ||||| ||||||| | |||| || || | |||||||||||||||||
Sbjct 5188 ATAATGAGCCGTTCGCGGTTTCACCATTATAGGTTTATTTGAACTTAGACATGCATGGCT 5129
Query 472 TAATCTTTGAGACAAGCATATGAC 495
|| ||||||||||||||||| ||
Sbjct 5128 TAGCCTTTGAGACAAGCATATAAC 5105
>seq228
Length=3554215
Score = 136 bits (150), Expect = 1e-29
Identities = 144/187 (77%), Gaps = 2/187 (1%)
Strand=Plus/Plus
Query 40 CAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCT 99
|| ||||| |||||||||| ||| | | |||| |||||||||||| || ||||||||
Sbjct 3161040 CATTATTTTTTGTCACTACTTCCTGATTT-GGGAGTGGGTAATTTGCATGCTTGCTGCCT 3161098
Query 100 TCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCG 159
|||||||||||||||||| ||||| |||||| | |||| ||||| |||||| ||| || |
Sbjct 3161099 TCCTTGGATGTGGTAGCCATTTCTTAGGCTCTCACTCCTGAATCAAACCCTCATT-CCTG 3161157
Query 160 TTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAAT 219
| | || | | |||||||||| | || |||| ||||||| || || ||| |
Sbjct 3161158 TCATCCATGGTCACCATGGTAGACAGAGTGACTGTCATCAAAAGTTGGTATGGTAGACGT 3161217
Query 220 TTGAATG 226
|||||||
Sbjct 3161218 TTGAATG 3161224
>seq106
Length=6311556
Score = 125 bits (138), Expect = 2e-26
Identities = 97/112 (87%), Gaps = 5/112 (4%)
Strand=Plus/Minus
Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGAT--TGCTTA 452
|||| ||| ||||||||||| |||||||||| |||||||||||||| | ||| |
Sbjct 3594900 CAAAGGAACCATAACTGATTTGATGAGCCATTTGCAGTTTCACTGTACCGGCCATGC--A 3594843
Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 3594842 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTAGCAG 3594792
>seq433
Length=1821963
Score = 77.0 bits (84), Expect = 1e-11
Identities = 112/153 (73%), Gaps = 9/153 (6%)
Strand=Plus/Plus
Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA---GTAAGGT-ACT-ATCAA 397
||||||||| ||||| |||| |||||| | |||| | | | || || | | | |||
Sbjct 1453597 AGCATGTATCAGCTCCAGAACTACCACAGACATCCCCGAAAGAGAAAAGTGAGTGACCAA 1453656
Query 398 ATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTAT--AC 455
| | | |||| |||||||||| |||||| |||||||| ||||| | | | ||
Sbjct 1453657 AGGATCCATAAATGATTTAATGGGCCATTTACAGTTTCA--GTATACCCGCCATGTGTAC 1453714
Query 456 TTAGACATGCATGGCTTAATCTTTGAGACAAGC 488
|||||||||||||||||||| || |||||||
Sbjct 1453715 CTAGACATGCATGGCTTAATCCTTCTGACAAGC 1453747
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510291915776
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |