Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq2543 363 5e-98 seq228 136 1e-29 seq106 125 2e-26 seq433 77.0 1e-11 >seq2543 Length=8359 Score = 363 bits (402), Expect = 5e-98 Identities = 389/504 (77%), Gaps = 10/504 (2%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||| |||||| || || | | |||||| | || || ||||| | |||||||||| Sbjct 5607 GTACCCATTCCGATAACCGGCCTACAAAGAGAACGGTCTCGTTATTTTTCGTCACTACCT 5548 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 || | | | || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5547 CCTCATTCTGAGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 5488 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||||| ||||||||| |||| |||||||||||| ||||||||| Sbjct 5487 TCTCAGGCTCCCTCTCCGGAGTCGAACCCTTATTCTCCGTTACCCGTTACAACCATGGTA 5428 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||| || ||||||||||||||||||| |||||| | |||| || ||||||| Sbjct 5427 GGCACATAAACTACCATCGAAAGTTGATAAGGCAGACACTTGATAGATATGTCGCCGGTA 5368 Query 241 CAAGGCCATGCGATTCGTTA-AGTTATTATGAATCACCAAGGAGCC--CCGA-AGGGCGT 296 |||| ||||||||| | | || |||| || ||||||| | | | | | || Sbjct 5367 CAAGACCATGCGATCAGCAATAGCTATTCAGAGTCACCAATTAACGGGCTTATAACCCGA 5308 Query 297 TGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTA-GCATGTATTAGC 355 | | |||| |||||||| || | | | ||| ||||||| | ||| |||||||||||| Sbjct 5307 TTGGTTTTAATCTAATAGATGCGCTCGTTCAAAAGTCGGAGCTTTGGTGCATGTATTAGC 5248 Query 356 TCTAGAATTACCACGGTTATCCATGTAG--TAAGGTACTATCAAATAAACGATAACTGAT 413 ||||||||| |||| |||||||| || | ||| || ||||| || | ||| ||| | Sbjct 5247 TCTAGAATTGCCACAGTTATCCACGTTGGATAATCAAC-ATCAAGTACATTATAGCTGTT 5189 Query 414 TTAATGAGCCATTCGCAGTTTCACTGT-ATAGATTGCTTATA-CTTAGACATGCATGGCT 471 ||||||||| ||||| ||||||| | |||| || || | ||||||||||||||||| Sbjct 5188 ATAATGAGCCGTTCGCGGTTTCACCATTATAGGTTTATTTGAACTTAGACATGCATGGCT 5129 Query 472 TAATCTTTGAGACAAGCATATGAC 495 || ||||||||||||||||| || Sbjct 5128 TAGCCTTTGAGACAAGCATATAAC 5105 >seq228 Length=3554215 Score = 136 bits (150), Expect = 1e-29 Identities = 144/187 (77%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 40 CAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCT 99 || ||||| |||||||||| ||| | | |||| |||||||||||| || |||||||| Sbjct 3161040 CATTATTTTTTGTCACTACTTCCTGATTT-GGGAGTGGGTAATTTGCATGCTTGCTGCCT 3161098 Query 100 TCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCG 159 |||||||||||||||||| ||||| |||||| | |||| ||||| |||||| ||| || | Sbjct 3161099 TCCTTGGATGTGGTAGCCATTTCTTAGGCTCTCACTCCTGAATCAAACCCTCATT-CCTG 3161157 Query 160 TTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAAT 219 | | || | | |||||||||| | || |||| ||||||| || || ||| | Sbjct 3161158 TCATCCATGGTCACCATGGTAGACAGAGTGACTGTCATCAAAAGTTGGTATGGTAGACGT 3161217 Query 220 TTGAATG 226 ||||||| Sbjct 3161218 TTGAATG 3161224 >seq106 Length=6311556 Score = 125 bits (138), Expect = 2e-26 Identities = 97/112 (87%), Gaps = 5/112 (4%) Strand=Plus/Minus Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGAT--TGCTTA 452 |||| ||| ||||||||||| |||||||||| |||||||||||||| | ||| | Sbjct 3594900 CAAAGGAACCATAACTGATTTGATGAGCCATTTGCAGTTTCACTGTACCGGCCATGC--A 3594843 Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 3594842 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTAGCAG 3594792 >seq433 Length=1821963 Score = 77.0 bits (84), Expect = 1e-11 Identities = 112/153 (73%), Gaps = 9/153 (6%) Strand=Plus/Plus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA---GTAAGGT-ACT-ATCAA 397 ||||||||| ||||| |||| |||||| | |||| | | | || || | | | ||| Sbjct 1453597 AGCATGTATCAGCTCCAGAACTACCACAGACATCCCCGAAAGAGAAAAGTGAGTGACCAA 1453656 Query 398 ATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTAT--AC 455 | | | |||| |||||||||| |||||| |||||||| ||||| | | | || Sbjct 1453657 AGGATCCATAAATGATTTAATGGGCCATTTACAGTTTCA--GTATACCCGCCATGTGTAC 1453714 Query 456 TTAGACATGCATGGCTTAATCTTTGAGACAAGC 488 |||||||||||||||||||| || ||||||| Sbjct 1453715 CTAGACATGCATGGCTTAATCCTTCTGACAAGC 1453747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510291915776