Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016-
04-04] 7,156 sequences; 2,717,703,182 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq526 205 7e-48
seq630 134 1e-26
seq57 95.1 1e-14
seq2 91.5 1e-13
>seq526
Length=1402496
Score = 205 bits (226), Expect = 7e-48
Identities = 597/902 (66%), Gaps = 27/902 (3%)
Strand=Plus/Minus
Query 61041 AGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTA 61100
||| || ||||| || || || | |||||||||||||| | | || |||| ||| |
Sbjct 114279 AGAAAACCCTCGCCGCTTTGTCATTTTCCCCATCGAGTACCACAACATCTGGCAGATGCA 114220
Query 61101 CAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAA 61160
|| |||||||| || |||||||||| | |||||||| || ||||||| |||||
Sbjct 114219 TAAGAAGGCGGACGCCTCCTTCTGGAGCGCTGAGGAGGTAGACCTGTCCAAGGACATACG 114160
Query 61161 TGACTGGGAG--CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTC 61218
||||||| | | | | | || || || || || || || |||| |||
Sbjct 114159 GCACTGGGAATCCCTGAAGCCTGAGGAGAGATACTTTATATCTCAC--GTTCTGGCTTTC 114102
Query 61219 TTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG-TTTCGCGCAGGAGGT 61277
|||| || || || || || ||||| || || |||| || ||| || || || |
Sbjct 114101 CTTGCAGCAAGTGATGGCATAGTAAATGAAAACTTGGTGGAGCGATTTAGC-CAAGAACT 114043
Query 61278 GCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTC 61337
|| | | || | | |||||||| |||||||| ||||||||||| || | || ||
Sbjct 114042 TCAGATTACAGAAGGCTGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATACATTC 113983
Query 61338 GGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATT 61397
|| ||||| || | || ||||| || ||||| | || | ||| | ||| |
Sbjct 113982 TGAAATGTATGGTCTCCTTATCGACACTTACATAAAAGATCCCAATGAAAGGGAATTTCT 113923
Query 61398 GTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTG 61457
||||||||||| || ||||| || || || ||| || ||||||||||| ||
Sbjct 113922 CTTCAATGCCATTGAAACGATGCCTTGTGTCAACAAGAAGGCAGATTGGGCCTTGCGCTG 113863
Query 61458 GATCACCAGTACAA--CGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAG 61515
||| | |||| |||||| | ||||||||| | | || ||||| | || ||
Sbjct 113862 GAT--TGGGGACAAAGAGGCTACCTATGGTGAACGCGTTGTAGCCTTTGCTGCAGTGGAA 113805
Query 61516 GG--TGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTA 61573
|| | || ||||| ||| || ||||| | || || ||| | |||||| | ||||| |
Sbjct 113804 GGCATCTACTTTTC--TGGTTCTTTTGCATCCATATTCTGGCTCAAGAAATGAGGACTGA 113747
Query 61574 TGCCCGGTCTGACCTTCAGCAATGA-GTTGATATCACGCGACGAGGGCATGCATTGTGAT 61632
|||| || || || || |||| || || || | || ||||| | || | ||
Sbjct 113746 TGCCTGGCCTCACATTTTCTCATGACCTTTTTAGCA-GAGATGAGGGTTTACACTCACAT 113688
Query 61633 TTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGT 61692
|||||| || | ||||||| | || || | || || |||||| | || |
Sbjct 113687 TTTGCTTGCCTGATGTTCAAAC---ACCTAGTACACAAACCATCAGAGGAGAGAGTAAGA 113631
Query 61693 GAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTC 61752
|| || | | || || || ||||| || ||||| ||||| || ||||| ||
Sbjct 113630 GAAATAACTATCAATGCTGTTCGGATAGAACAAGAGTTTCTTACTGAGGCCTTGCCTGTG 113571
Query 61753 TCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGT 61812
||||| || |||||||| |||||| ||| || ||||| ||||| || ||| |
Sbjct 113570 GAGCTCATTGGGATGAATTGCACTCTAATGAAGCAATACATTGAGTTTGTGGCAGACAGA 113511
Query 61813 CTGTTGGTCGATTTGGGTATGAAGC--GGATCT-ATAATACGAAAAACCCATTTGATTTC 61869
| || | || ||||| | ||| || | | | |||| | || |||||||| ||
Sbjct 113510 C--ATGCTGGAACTGGGT-TTTAGCAAGGTTTTCAGAATA--GAGAATCCATTTGACTTT 113456
Query 61870 ATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTAT 61929
||||| | ||||| ||||| || ||||| || || || ||||| | |||||||| |||
Sbjct 113455 ATGGAGAATATTTCACTGGAAGGAAAGACTAACTTCTTTGAGAAGAGAGTAGGCGAGTAT 113396
Query 61930 CA 61931
||
Sbjct 113395 CA 113394
>seq630
Length=879232
Score = 134 bits (148), Expect = 1e-26
Identities = 538/833 (65%), Gaps = 28/833 (3%)
Strand=Plus/Minus
Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAAT 61161
|| ||| |||| || ||||| ||||| | || ||||| || |||||| |||||
Sbjct 418359 AACAAGACGGAGGCCTCCTTTTGGACCGCCGAAGAGGTGGACCCGTCCAAGGACATTCGG 418300
Query 61162 GACTGGGAG--CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCT 61219
||||||| | | | | | || || ||| || || || || || ||||
Sbjct 418299 CACTGGGAATCCCTGAAGCCCGAGGAGAG--ACACTTTATATCCCACGTTCTGAGTTTCT 418242
Query 61220 TTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG-TTTCGCGCAGGAGGTG 61278
|||| || ||||| || || ||||| || || |||| || ||| || || || ||
Sbjct 418241 TTGCAGCAAGTGACGGCATAGTAAATGAAAACTTGGTGGAGCGATTTAGC-CAAGAAGTT 418183
Query 61279 CAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCG 61338
|| | | ||||| || |||||||| || ||||| |||| |||||| || | || ||
Sbjct 418182 CAGATTACAGAGGCCCGCTGTTTCTATGGATTCCAAATTGGCATGGACAACATACATTCT 418123
Query 61339 GAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTG 61398
|| ||||| ||| | || | || ||||| || | || | ||| | ||| |
Sbjct 418122 GAAATGTATAGTCTCCTTACTGACACGTATATAAAAGATCCCAGCGAAAGGGAATTTCTC 418063
Query 61399 TTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGG 61458
||||||||||| || ||||| || || ||| ||| || || ||||||| |||
Sbjct 418062 TTCAATGCCATTGAAACGATGCCTTGTGTCAAGAAGAAGGCAGACCGGGCCTTGCGCTGG 418003
Query 61459 ATCACCAGTACAA--CGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGG 61516
|| | |||| |||||| | |||||||| || ||||| | || || |
Sbjct 418002 AT--TGGGGACAAAGAGGCTACCTATGGTGAAC-------TGCCTTTGCTGCAGTGGAAG 417952
Query 61517 GTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGC 61576
| || || || ||| || || || | || || ||| | |||||||| ||||| ||||
Sbjct 417951 GCGTCTTCTTTTCTGGTTCTTTAGCTTCCATATTCTGGCTTAAGAAACGAGGACTGATGC 417892
Query 61577 CCGGTCTGACCTTCAGCAATG-AGTTGATATCACGCGACGAGGGCATGCATTGTGATTTT 61635
| || || || || |||| | || || || | || ||||| | || |||||||||
Sbjct 417891 CTGGCCTCACATTTTCTAATGAACTTTTTAGCA-GAGATGAGGGTTTACACTGTGATTTT 417833
Query 61636 GCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAG 61695
||| || | ||| ||| | || || | || || ||| | | | | ||
Sbjct 417832 GCTTGCCTGATGTTCCAAC---ACCTAGTACACAAACCATCAGAGCCGGGAGAAAGAGAA 417776
Query 61696 ATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCA 61755
|| || | || || || |||||||| || || ||||| ||||| ||
Sbjct 417775 ATAATTATCAATGCTGTTCGGATAGAACAGGAGTTCCTCACTGAGATCTTGCCTGTGAAG 417716
Query 61756 CTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTG 61815
||||| || |||||||| |||||| ||| || ||||| ||||| || ||| | ||
Sbjct 417715 CTCATTGGGATGAATTGCACTCTAATGAAGCAATACATTGAGTTTGTGGCAGACAGACTT 417656
Query 61816 TTGGTCGATTTGGGTATGAAGC--GGATCT-ATAATACGAAAAACCCATTTGATTTCATG 61872
|| | || ||||| | ||| || | | | | || | || |||||||| || |||
Sbjct 417655 ATGCTGGAACTGGGT-TTTAGCAAGGTTTTCAGAGTA--GAGAATCCATTTGACTTTATG 417599
Query 61873 GACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGA 61925
|| | ||| | ||||| || |||| || || || ||||| | ||||| ||
Sbjct 417598 GAGAATATTCCACTGGAAGGAAAGATTAACTTCTTTGAGAAGAGAGTAGGTGA 417546
>seq57
Length=8566406
Score = 95.1 bits (104), Expect = 1e-14
Identities = 85/107 (79%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329
||||||||||| || | ||||| || |||||||| ||||| || ||| ||| ||||||
Sbjct 1424995 CAGGAGGTGCAGGTTCCAGAGGCTCGCTGTTTCTATGGCTTTCAAATTCTCATCGAGAAT 1424936
Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376
|| || || |||||||||||| | || || || || |||||||| ||
Sbjct 1424935 GTTCATTCAGAGATGTACAGTTTGCTAATAGACACTTACATCAGAGA 1424889
>seq2
Length=18007423
Score = 91.5 bits (100), Expect = 1e-13
Identities = 89/115 (77%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084
|||| || || || |||||| || || || || || | |||||||||||||| | |
Sbjct 1937616 ATGAGCCGCTGCTGAGAGAGAACCCGCGCCGCTTTGTCATTTTCCCCATCGAGTACCACG 1937675
Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139
|||| |||| |||||||| |||||||| || ||||||||||| | ||||||||
Sbjct 1937676 ATATCTGGCAGATGTACAAGAAGGCGGAGGCCTCCTTCTGGACCGCCGAGGAGGT 1937730
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397533326603840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |