Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cebus_20capucinus_20imitator_20[refseq_20GCF_5F001604975.1_202016- 04-04] 7,156 sequences; 2,717,703,182 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq526 205 7e-48 seq630 134 1e-26 seq57 95.1 1e-14 seq2 91.5 1e-13 >seq526 Length=1402496 Score = 205 bits (226), Expect = 7e-48 Identities = 597/902 (66%), Gaps = 27/902 (3%) Strand=Plus/Minus Query 61041 AGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTA 61100 ||| || ||||| || || || | |||||||||||||| | | || |||| ||| | Sbjct 114279 AGAAAACCCTCGCCGCTTTGTCATTTTCCCCATCGAGTACCACAACATCTGGCAGATGCA 114220 Query 61101 CAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAA 61160 || |||||||| || |||||||||| | |||||||| || ||||||| ||||| Sbjct 114219 TAAGAAGGCGGACGCCTCCTTCTGGAGCGCTGAGGAGGTAGACCTGTCCAAGGACATACG 114160 Query 61161 TGACTGGGAG--CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTC 61218 ||||||| | | | | | || || || || || || || |||| ||| Sbjct 114159 GCACTGGGAATCCCTGAAGCCTGAGGAGAGATACTTTATATCTCAC--GTTCTGGCTTTC 114102 Query 61219 TTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG-TTTCGCGCAGGAGGT 61277 |||| || || || || || ||||| || || |||| || ||| || || || | Sbjct 114101 CTTGCAGCAAGTGATGGCATAGTAAATGAAAACTTGGTGGAGCGATTTAGC-CAAGAACT 114043 Query 61278 GCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTC 61337 || | | || | | |||||||| |||||||| ||||||||||| || | || || Sbjct 114042 TCAGATTACAGAAGGCTGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATACATTC 113983 Query 61338 GGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATT 61397 || ||||| || | || ||||| || ||||| | || | ||| | ||| | Sbjct 113982 TGAAATGTATGGTCTCCTTATCGACACTTACATAAAAGATCCCAATGAAAGGGAATTTCT 113923 Query 61398 GTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTG 61457 ||||||||||| || ||||| || || || ||| || ||||||||||| || Sbjct 113922 CTTCAATGCCATTGAAACGATGCCTTGTGTCAACAAGAAGGCAGATTGGGCCTTGCGCTG 113863 Query 61458 GATCACCAGTACAA--CGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAG 61515 ||| | |||| |||||| | ||||||||| | | || ||||| | || || Sbjct 113862 GAT--TGGGGACAAAGAGGCTACCTATGGTGAACGCGTTGTAGCCTTTGCTGCAGTGGAA 113805 Query 61516 GG--TGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTA 61573 || | || ||||| ||| || ||||| | || || ||| | |||||| | ||||| | Sbjct 113804 GGCATCTACTTTTC--TGGTTCTTTTGCATCCATATTCTGGCTCAAGAAATGAGGACTGA 113747 Query 61574 TGCCCGGTCTGACCTTCAGCAATGA-GTTGATATCACGCGACGAGGGCATGCATTGTGAT 61632 |||| || || || || |||| || || || | || ||||| | || | || Sbjct 113746 TGCCTGGCCTCACATTTTCTCATGACCTTTTTAGCA-GAGATGAGGGTTTACACTCACAT 113688 Query 61633 TTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGT 61692 |||||| || | ||||||| | || || | || || |||||| | || | Sbjct 113687 TTTGCTTGCCTGATGTTCAAAC---ACCTAGTACACAAACCATCAGAGGAGAGAGTAAGA 113631 Query 61693 GAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTC 61752 || || | | || || || ||||| || ||||| ||||| || ||||| || Sbjct 113630 GAAATAACTATCAATGCTGTTCGGATAGAACAAGAGTTTCTTACTGAGGCCTTGCCTGTG 113571 Query 61753 TCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGT 61812 ||||| || |||||||| |||||| ||| || ||||| ||||| || ||| | Sbjct 113570 GAGCTCATTGGGATGAATTGCACTCTAATGAAGCAATACATTGAGTTTGTGGCAGACAGA 113511 Query 61813 CTGTTGGTCGATTTGGGTATGAAGC--GGATCT-ATAATACGAAAAACCCATTTGATTTC 61869 | || | || ||||| | ||| || | | | |||| | || |||||||| || Sbjct 113510 C--ATGCTGGAACTGGGT-TTTAGCAAGGTTTTCAGAATA--GAGAATCCATTTGACTTT 113456 Query 61870 ATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTAT 61929 ||||| | ||||| ||||| || ||||| || || || ||||| | |||||||| ||| Sbjct 113455 ATGGAGAATATTTCACTGGAAGGAAAGACTAACTTCTTTGAGAAGAGAGTAGGCGAGTAT 113396 Query 61930 CA 61931 || Sbjct 113395 CA 113394 >seq630 Length=879232 Score = 134 bits (148), Expect = 1e-26 Identities = 538/833 (65%), Gaps = 28/833 (3%) Strand=Plus/Minus Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAAT 61161 || ||| |||| || ||||| ||||| | || ||||| || |||||| ||||| Sbjct 418359 AACAAGACGGAGGCCTCCTTTTGGACCGCCGAAGAGGTGGACCCGTCCAAGGACATTCGG 418300 Query 61162 GACTGGGAG--CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCT 61219 ||||||| | | | | | || || ||| || || || || || |||| Sbjct 418299 CACTGGGAATCCCTGAAGCCCGAGGAGAG--ACACTTTATATCCCACGTTCTGAGTTTCT 418242 Query 61220 TTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG-TTTCGCGCAGGAGGTG 61278 |||| || ||||| || || ||||| || || |||| || ||| || || || || Sbjct 418241 TTGCAGCAAGTGACGGCATAGTAAATGAAAACTTGGTGGAGCGATTTAGC-CAAGAAGTT 418183 Query 61279 CAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCG 61338 || | | ||||| || |||||||| || ||||| |||| |||||| || | || || Sbjct 418182 CAGATTACAGAGGCCCGCTGTTTCTATGGATTCCAAATTGGCATGGACAACATACATTCT 418123 Query 61339 GAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTG 61398 || ||||| ||| | || | || ||||| || | || | ||| | ||| | Sbjct 418122 GAAATGTATAGTCTCCTTACTGACACGTATATAAAAGATCCCAGCGAAAGGGAATTTCTC 418063 Query 61399 TTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGG 61458 ||||||||||| || ||||| || || ||| ||| || || ||||||| ||| Sbjct 418062 TTCAATGCCATTGAAACGATGCCTTGTGTCAAGAAGAAGGCAGACCGGGCCTTGCGCTGG 418003 Query 61459 ATCACCAGTACAA--CGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGG 61516 || | |||| |||||| | |||||||| || ||||| | || || | Sbjct 418002 AT--TGGGGACAAAGAGGCTACCTATGGTGAAC-------TGCCTTTGCTGCAGTGGAAG 417952 Query 61517 GTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGC 61576 | || || || ||| || || || | || || ||| | |||||||| ||||| |||| Sbjct 417951 GCGTCTTCTTTTCTGGTTCTTTAGCTTCCATATTCTGGCTTAAGAAACGAGGACTGATGC 417892 Query 61577 CCGGTCTGACCTTCAGCAATG-AGTTGATATCACGCGACGAGGGCATGCATTGTGATTTT 61635 | || || || || |||| | || || || | || ||||| | || ||||||||| Sbjct 417891 CTGGCCTCACATTTTCTAATGAACTTTTTAGCA-GAGATGAGGGTTTACACTGTGATTTT 417833 Query 61636 GCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAG 61695 ||| || | ||| ||| | || || | || || ||| | | | | || Sbjct 417832 GCTTGCCTGATGTTCCAAC---ACCTAGTACACAAACCATCAGAGCCGGGAGAAAGAGAA 417776 Query 61696 ATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCA 61755 || || | || || || |||||||| || || ||||| ||||| || Sbjct 417775 ATAATTATCAATGCTGTTCGGATAGAACAGGAGTTCCTCACTGAGATCTTGCCTGTGAAG 417716 Query 61756 CTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTG 61815 ||||| || |||||||| |||||| ||| || ||||| ||||| || ||| | || Sbjct 417715 CTCATTGGGATGAATTGCACTCTAATGAAGCAATACATTGAGTTTGTGGCAGACAGACTT 417656 Query 61816 TTGGTCGATTTGGGTATGAAGC--GGATCT-ATAATACGAAAAACCCATTTGATTTCATG 61872 || | || ||||| | ||| || | | | | || | || |||||||| || ||| Sbjct 417655 ATGCTGGAACTGGGT-TTTAGCAAGGTTTTCAGAGTA--GAGAATCCATTTGACTTTATG 417599 Query 61873 GACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGA 61925 || | ||| | ||||| || |||| || || || ||||| | ||||| || Sbjct 417598 GAGAATATTCCACTGGAAGGAAAGATTAACTTCTTTGAGAAGAGAGTAGGTGA 417546 >seq57 Length=8566406 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| || | ||||| || |||||||| ||||| || ||| ||| |||||| Sbjct 1424995 CAGGAGGTGCAGGTTCCAGAGGCTCGCTGTTTCTATGGCTTTCAAATTCTCATCGAGAAT 1424936 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 || || || |||||||||||| | || || || || |||||||| || Sbjct 1424935 GTTCATTCAGAGATGTACAGTTTGCTAATAGACACTTACATCAGAGA 1424889 >seq2 Length=18007423 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084 |||| || || || |||||| || || || || || | |||||||||||||| | | Sbjct 1937616 ATGAGCCGCTGCTGAGAGAGAACCCGCGCCGCTTTGTCATTTTCCCCATCGAGTACCACG 1937675 Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 |||| |||| |||||||| |||||||| || ||||||||||| | |||||||| Sbjct 1937676 ATATCTGGCAGATGTACAAGAAGGCGGAGGCCTCCTTCTGGACCGCCGAGGAGGT 1937730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397533326603840