Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq3171 147 3e-33 seq2818 77.0 5e-12 >seq3171 Length=2389652 Score = 147 bits (162), Expect = 3e-33 Identities = 176/234 (75%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| ||||| ||| |||||| |||||| | Sbjct 2008794 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCCGCACTTACTGGGAATT-C 2008851 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||| | | || ||||||||| | |||| |||||||| ||||| | || Sbjct 2008852 CTCGCTCATAGGGAATAATTGCAATCCCCGATCCTCATCACGAATGGGGTTCAACGGGTT 2008911 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 || || | ||| | || ||| | || || ||| ||||||||| |||||||| Sbjct 2008912 ACACGCATCTGCCAGCGTAGGGTAAGCACACGCTGAGCCAGTCAGTGTAGTGCGCGTGCA 2008971 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 2008972 GCCCGGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 2009024 >seq2818 Length=24410408 Score = 77.0 bits (84), Expect = 5e-12 Identities = 51/57 (89%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||||||||| | |||| |||| | ||||||||||||||||||||||||||||||| Sbjct 8451596 TCAGTGTAGCACACGTGTAGCCCTGGACATCTAAGGGCATCACAGACCTGTTATTGC 8451652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751916710595