Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq2198 122 4e-25 seq3337 118 4e-24 seq3171 113 2e-22 seq3944 96.9 1e-17 seq3504 95.1 5e-17 seq3370 84.2 9e-14 seq9995 82.4 3e-13 seq3701 78.8 4e-12 >seq2198 Length=5661728 Score = 122 bits (134), Expect = 4e-25 Identities = 99/120 (83%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||| |||||||||||||||||||||| |||| |||||||||||| |||||| Sbjct 5062058 TGTTAGGACCCCAAAGATGGTGAACTATGCCTGAGGAGGGCGAAGCCAGAGGACACTCTG 5061999 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| | || || ||| | |||||||| |||||| | |||||||||||| || Sbjct 5061998 GTGGAGGTCCATTGCAGTCCTGTCCTGCAAATCCATCGTCCGACCTGGGTATAGGGGTGA 5061939 >seq3337 Length=3448319 Score = 118 bits (130), Expect = 4e-24 Identities = 107/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | ||||| | |||| ||||| ||||| |||||||||||||||| |||| |||| Sbjct 517490 GAGCATGAGCACAAATGTTAGGACCTGAAAGGTGGTGAACTATGCCTGGGCAGGGCGAAG 517549 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| | ||| || ||| ||||||||| || || || Sbjct 517550 CCAGAGGAAACTCTGGTGGAGGTCCATAGCAGTCCTGATGTGCAAATCAGTCATCCAACC 517609 Query 669 TGGGTATAGGGGCGA 683 ||||| ||||| ||| Sbjct 517610 TGGGTGTAGGGACGA 517624 >seq3171 Length=2389652 Score = 113 bits (124), Expect = 2e-22 Identities = 97/120 (81%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| ||||||||||||||||| ||||| |||| ||||| |||||||||||||||||| Sbjct 2004978 TGTTAGGACCCGAAAGATGGTGGACTATACCTGGGTAGGGCAAAGCCAGAGGAAACTCTG 2004919 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| || |||||| ||| |||||||| | || | |||||||||| || || Sbjct 2004918 GTGGAGGTCCGTAGCGGTCCTGATATGCAAATCAGTTCTCCGACTTGGGTATAGAGGTGA 2004859 Score = 96.9 bits (106), Expect = 1e-17 Identities = 116/157 (74%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 2006111 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 2006052 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | || || ||| |||| ||||||| | | ||||| |||| || |||||| | Sbjct 2006051 ACCGGTACGAAACCAATAGTCAACAAGTACCCTAAGGGAAAGTTGAACAGAACTTTG--A 2005994 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 |||||||| || || ||||||| ||| | ||| || Sbjct 2005993 AGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAA 2005957 >seq3944 Length=986237 Score = 96.9 bits (106), Expect = 1e-17 Identities = 92/118 (78%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| || || ||||||| | ||||||||||| |||| |||||||||||||||||| Sbjct 124105 TGTTAGGCACCAAAAGATGATAAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTT 124046 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 |||| || | || ||| ||| |||||| ||| ||||| || |||||||| |||| Sbjct 124045 GTGGGGGTCTGTAGTGGTCCTGAGGTGCAAGTCGGTCGTCTGATCTGGGTATAAGGGC 123988 Score = 91.5 bits (100), Expect = 6e-16 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| || || |||||| ||||||||||||| |||| |||||| ||| |||||||| Sbjct 273434 TGTTAGGCACCAAAAGATAATGAACTATGCCTGGGCAGGGCGAAGCCGGAGAAAACTCTG 273375 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 |||| | | ||| || ||| | |||||||| |||||| || || |||||||||| Sbjct 273374 GTGGGCGTCTGTAGCAGTCCTGACATGCAAATCAATCGTCTGATCTGTGTATAGGGGC 273317 >seq3504 Length=1076599 Score = 95.1 bits (104), Expect = 5e-17 Identities = 101/132 (77%), Gaps = 1/132 (1%) Strand=Plus/Plus Query 549 GAGTAAGAGCATA-GCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAA 607 ||| ||||| | | | |||| || || | ||||| ||||||||||||| || ||| Sbjct 558896 GAGCAAGAGAACATGTTGTTAGGCACCAAGAGATGATGAACTATGCCTGGGCAGCAGGAA 558955 Query 608 GCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAAT 667 |||||||||||| |||||||||| | |||||| ||| | || |||||| ||||| || Sbjct 558956 GCCAGAGGAAACGCTGGTGGAGGTCTGTAGCGGTCCTGACCTGTAAATCGGTCGTCTGAT 559015 Query 668 TTGGGTATAGGG 679 ||||||| ||| Sbjct 559016 CTGGGTATGGGG 559027 >seq3370 Length=26952557 Score = 84.2 bits (92), Expect = 9e-14 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||| | |||| |||||||||||| | || || | |||||| | | |||| ||||||| Sbjct 3587669 GAGTTGGGTTGCTTGGGAATGCAGACCAAAGTGAGTGGTAAACTCCATCTATGGCTAAAT 3587728 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | |||| |||||| |||| ||| ||| | | ||||| ||||||| |||||| | Sbjct 3587729 ACTGGCGTGAGACCAATAGTCAACACGTACCATAAGGGAAAGTTGAAAAGAACTTTGAAG 3587788 Query 160 AGAGAGTTAAAAAG 173 ||||| || || || Sbjct 3587789 AGAGACTTCAAGAG 3587802 >seq9995 Length=13611021 Score = 82.4 bits (90), Expect = 3e-13 Identities = 81/104 (78%), Gaps = 2/104 (2%) Strand=Plus/Minus Query 576 AAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGC 635 ||||||||| ||||||||||| | | |||||||||||||| |||||||||| | | Sbjct 7896222 AAAGATGGTAAACTATGCCTGGGCAAGACGAAGCCAGAGGAAA--CTGGTGGAGGTCCAC 7896165 Query 636 AGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGG 679 | |||| ||| | |||||| ||| ||| || ||| ||||||| Sbjct 7896164 AACGGTCCTGATGGGCAAATTGATTGTCCAACCTGGATATAGGG 7896121 >seq3701 Length=25348628 Score = 78.8 bits (86), Expect = 4e-12 Identities = 88/115 (77%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||||| ||||| || || | || || || ||||||||||||||||||| || | ||| Sbjct 10517678 GAGTATGAGCACAG-TGCTAGGGCCTAAAGGATGGTGAACTATGCCTGAGCAGAGGAAAG 10517620 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTC 663 ||| |||||||| ||||||||| | | || |||||| ||||| || | || || Sbjct 10517619 CCACAGGAAACT-TGGTGGAGGTTTGTAGTGGTTCTAATGTGCAGATTGGTCATC 10517566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079754762150