Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq3171 241 2e-61 seq7893 154 2e-35 seq2287 145 1e-32 seq2818 134 2e-29 >seq3171 Length=2389652 Score = 241 bits (266), Expect = 2e-61 Identities = 207/251 (82%), Gaps = 9/251 (4%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||||||| |||||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 2008952 GTCAGTGTAGTGCGCGTGCAGCCCGGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 2009010 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCAT- 130 ||| || | |||||| | |||| | |||||||||||||| | | || ||| Sbjct 2009011 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCT 2009069 Query 131 -AGTCG--ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 || | | | ||| |||||| | | ||||||||||||||||||||||||||||| Sbjct 2009070 CAGGGGTCACGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGAC 2009129 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 2009130 AAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCAAGAAAGAGCT 2009189 Query 248 ATCAATCTGTC 258 ||||||||||| Sbjct 2009190 ATCAATCTGTC 2009200 >seq7893 Length=21434487 Score = 154 bits (170), Expect = 2e-35 Identities = 108/123 (88%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 136 ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACT 195 |||| ||| | |||| | | |||||| ||| ||||| ||||| |||||||||||| || Sbjct 18825130 ATGGAACTAGTCAGCATGCCAGGGTCTCATTCCTTATCAGAATTTACCAGACAAATCGCT 18825189 Query 196 CCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCT 255 |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 18825190 CCACCAACTAAGAATGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTGTCAATCT 18825249 Query 256 GTC 258 ||| Sbjct 18825250 GTC 18825252 >seq2287 Length=3969606 Score = 145 bits (160), Expect = 1e-32 Identities = 100/113 (88%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | || ||||| || |||||| ||||||||||||||||| |||||||| Sbjct 1473345 CTAGTTAGCATTTCAAAGTCTCTTTTGTTATCAAAATTAACCAGACAAATCGCTCCACCA 1473404 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATC 254 |||||||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 1473405 ACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCTATCAATC 1473457 >seq2818 Length=24410408 Score = 134 bits (148), Expect = 2e-29 Identities = 160/212 (75%), Gaps = 9/212 (4%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||| | |||| |||| | |||||||||||||||||||||||||||||| || Sbjct 8451595 GTCAGTGTAGCACACGTGTAGCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CT 8451653 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAA---GCCAGCCACCAAC--CA 129 || | || |||||| | |||| | ||||||||||||| | | || | Sbjct 8451654 GAATC-TCAGGTGGCTGAATGCCACTTGTCCCTCTAAGAAGTTGGGGGATGTTGACTGCT 8451712 Query 130 TAGTCG--ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | | ||| ||| |||||| | | ||||| ||| ||||| ||||||| ||||| Sbjct 8451713 TGGGGGTCATGTAACTAGTTAGCATGCCAGAGTCTCATTCATTATCAGAATTAAACAGAC 8451772 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCA 219 |||| |||||||||||||||||| |||||||| Sbjct 8451773 AAATTACTCCACCAACTAAGAACTGCCATGCA 8451804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796711748673