Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq3171 300 3e-79 seq3613 255 1e-65 seq3504 208 1e-51 seq3944 197 2e-48 seq4031 89.7 9e-16 seq1656 82.4 1e-13 seq1922 80.6 5e-13 seq10439 77.0 6e-12 seq2022 75.2 2e-11 >seq3171 Length=2389652 Score = 300 bits (332), Expect = 3e-79 Identities = 225/264 (85%), Gaps = 0/264 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 2002098 TCACCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 2002157 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||||||||||||||||||||||| |||||||||||| ||||||||||||||| | Sbjct 2002158 TTAGTGGGTGAACAATCCAACGCTGGGTGAATTCTGCTTCACAATGATAGGAAGAGCCCA 2002217 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||||||||||||||||| | ||| |||||||| |||||| ||||||| |||||||||| Sbjct 2002218 CATCGAAGGATCAAAAAGTGATGTCACTATGAACACTTGGCCGCCACAAACCAGTTATCC 2002277 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||||| ||||| |||||| || | ||| | || | ||| |||| ||| Sbjct 2002278 CTGTGGTAACTGTTCTGACACCTCCTGCTTAAAACCCGAAAGGTCAGAAGAATCGTGAGG 2002337 Query 271 CCACACTTTCATGGTTTGTATTCA 294 || | ||||| |||||||||||| Sbjct 2002338 CCCCGGTTTCACGGTTTGTATTCA 2002361 >seq3613 Length=1552649 Score = 255 bits (282), Expect = 1e-65 Identities = 234/294 (80%), Gaps = 4/294 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||||||||||| Sbjct 532865 TACTGAGCAGGATTACCATGGCAACAACCCATCATCAGTAGGGTAAAACTAACCTGTCTC 532806 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | | |||||||| ||||||||| |||||||| |||| |||||||||||| | ||| | Sbjct 532805 ACCATGGTCTAAAGCCAGCTCACATTCCCTATCAGTGCGTGAACAATCCATCTCTTGTTG 532746 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||| ||||| ||| |||||||||||| || || || ||| Sbjct 532745 AATTCTGCTTCACAATGATAGGTAGAGC---CATGGAAGGATCAAAACGCCACATCTCTA 532689 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 ||| ||||||| ||| |||||||||||||||||||||||||||||| |||||| || Sbjct 532688 GGAAGGCTTGGCCACCAGAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 532629 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | || | |||||||| ||||| | |||||| ||| ||||||| Sbjct 532628 TAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTC 532575 >seq3504 Length=1076599 Score = 208 bits (230), Expect = 1e-51 Identities = 160/189 (85%), Gaps = 3/189 (2%) Strand=Plus/Minus Query 42 GTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGA 101 ||||||||| |||||||||||| | ||||||||||||||| ||||||||||| ||| ||| Sbjct 561235 GTAAAACTATCCTGTCTCATGATGTTCTAAACCCAGCTCAGGTTCCCTATTATTGGATGA 561176 Query 102 ACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGAT 161 || |||||| |||| |||||||||||| | |||||||||||| |||| || |||| Sbjct 561175 ACCATCCAATGCTTGGTGAATTCTGCTTC---ACAATAGGAAGAGCCAACATTGAGGGAT 561119 Query 162 CAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACT 221 ||||||| |||||||||||||| |||||| || |||| |||||||||||||||| || Sbjct 561118 CAAAAAGGGACGTCGCTATGAACTCTTGGCCGCTACAAAGTAGTTATCCCTGTGGTATCT 561059 Query 222 TTTCTGGCA 230 |||||| || Sbjct 561058 TTTCTGACA 561050 >seq3944 Length=986237 Score = 197 bits (218), Expect = 2e-48 Identities = 160/193 (83%), Gaps = 3/193 (2%) Strand=Plus/Plus Query 42 GTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGA 101 |||||||||||||||||||||| | ||||||| |||||| ||||| | ||| ||||||| Sbjct 121761 GTAAAACTAACCTGTCTCATGATGTTCTAAACTAAGCTCAGGTTCCTTGTTACTGGGTGA 121820 Query 102 ACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGAT 161 || |||||| |||| | ||||||||||| | ||||||||| || ||| | |||||| Sbjct 121821 ACCATCCAATGCTTGGCAAATTCTGCTTC---ACAATAGGAAGATCCAACACCAAAGGAT 121877 Query 162 CAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACT 221 |||||||||| || ||||||||| |||||| | ||||| ||||||||||||||||| || Sbjct 121878 CAAAAAGCAATGTTGCTATGAACTCTTGGCCACTACAAGGCAGTTATCCCTGTGGTATCT 121937 Query 222 TTTCTGGCACCTC 234 | |||| ||| || Sbjct 121938 TCTCTGACACGTC 121950 >seq4031 Length=22628411 Score = 89.7 bits (98), Expect = 9e-16 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 138 TAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCAC 197 ||||||||||| ||| |||| |||||||||||| || |||||||||||||||| ||||| Sbjct 10862805 TAGGAAGAGCCACCATTGAAGCATCAAAAAGCAAGGTTGCTATGAACGCTTGGCCGCCAC 10862864 Query 198 AAGCCAG 204 ||||||| Sbjct 10862865 AAGCCAG 10862871 >seq1656 Length=9219162 Score = 82.4 bits (90), Expect = 1e-13 Identities = 153/225 (68%), Gaps = 21/225 (9%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||| |||||| ||||| | | | | |||| | ||||||||||| | || Sbjct 2884174 TCATCAGTAGGACAAAACTGTCCTGTATTACCATTGCCTAATCACAGCTCACGTT-CTTA 2884232 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGA------------- 137 ||| || ||||||||||| || |||| ||| ||||||| |||| Sbjct 2884233 TTAATGTGTGAACAATCCCACCCTTAGTGAAGGCTGCTTCATAATGAAGAACCAATATTT 2884292 Query 138 ---TAGGAAGAGCCGACATCGAAGGATCAAA-AAGCAACG---TCGCTATGAACGCTTGG 190 | |||| || | ||| ||||| |||| || || | | || ||||| ||||| Sbjct 2884293 TACAACGAAGTGCTAATATCTAAGGACCAAACAAACAGTGGAATTGCCATGAATACTTGG 2884352 Query 191 CTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCT 235 | ||||| |||| ||| ||||| ||| |||||| ||||||| Sbjct 2884353 CCACCACATTGCAGTGATCTCTGTGATAAACTTTCTGACACCTCT 2884397 >seq1922 Length=8951703 Score = 80.6 bits (88), Expect = 5e-13 Identities = 98/134 (73%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 161 TCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAAC 220 ||| |||| | || |||||||| ||||| | ||||||||||||||| ||||| || || Sbjct 8331342 TCACAAAGTGATGTTGCTATGAATGCTTGACCACCACAAGCCAGTTATTCCTGTAGTCAC 8331283 Query 221 TTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTC 280 ||||||| || ||| || | ||| | || | ||||||| || || ||||| Sbjct 8331282 TTTTCTGACATCTCCTGCTTGAAACCCAAAAGGTCAGAAGGATCATGAGTCCCTGCTTTC 8331223 Query 281 ATGGTTTGTATTCA 294 | ||| |||||||| Sbjct 8331222 AAGGTCTGTATTCA 8331209 >seq10439 Length=12051322 Score = 77.0 bits (84), Expect = 6e-12 Identities = 67/82 (82%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || |||||||||||||||||||||| |||||| Sbjct 6765774 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACTTGTCTC 6765833 Query 60 ATGACGGTCTAAACCCAGCTCA 81 | || ||||||||||||| ||| Sbjct 6765834 AGGATGGTCTAAACCCAGATCA 6765855 >seq2022 Length=3002597 Score = 75.2 bits (82), Expect = 2e-11 Identities = 50/56 (89%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 163 AAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTA 218 |||||||||| || ||||| || ||||||||||||||| |||||||| |||||||| Sbjct 1961031 AAAAAGCAACATCACTATGCACACTTGGCTGCCACAAGTCAGTTATCTCTGTGGTA 1960976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854302316448