Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq10439 91.5 2e-16 seq3171 91.5 2e-16 seq7011 77.0 5e-12 seq5245 73.4 6e-11 seq3613 73.4 6e-11 >seq10439 Length=12051322 Score = 91.5 bits (100), Expect = 2e-16 Identities = 90/114 (79%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| ||||||||| || | |||||| || ||||| | || | || |||| || || | Sbjct 6765776 GTAGGAGAGGAACTGCAGG-TTCAGA-TATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 6765719 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | ||||||||||| |||| |||||||| ||||||||||||| |||||||||| Sbjct 6765718 GGGGCGAAGCTACCGTCTGTGGGATTATGACTGAACGCCTCTAGGTCAGAATCC 6765665 >seq3171 Length=2389652 Score = 91.5 bits (100), Expect = 2e-16 Identities = 90/114 (79%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| |||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 2002069 GTATGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 2002012 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | || ||||||||||||| |||||||| |||||||||| ||||||||||||| Sbjct 2002011 GGGGCAAAGCTACCATCTGTGGGATTATGACTGAACGCCTGTAAGTCAGAATCC 2001958 >seq7011 Length=47169369 Score = 77.0 bits (84), Expect = 5e-12 Identities = 84/109 (77%), Gaps = 2/109 (2%) Strand=Plus/Minus Query 6 AGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGC 65 ||||||||| | | |||||| | ||| | | || | || |||| || || || | Sbjct 21976196 AGAGGAACCACAGG-TTCAGAC-ATTTGTTGTATGTGCTTGGCTGAGGAGCCAATGGGGT 21976139 Query 66 GAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 |||||||||||||| |||||||| ||||| |||||||||||||||||| Sbjct 21976138 GAAGCTACCATCTGTGGGATTATGACTGAATGCCTCTAAGTCAGAATCC 21976090 >seq5245 Length=30444539 Score = 73.4 bits (80), Expect = 6e-11 Identities = 51/58 (88%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 64 GCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAG 121 || ||||||||||||| |||||||| |||||| ||||||||||||||||| | |||| Sbjct 20336634 GCAAAGCTACCATCTGTGGGATTATGACTGAACACCTCTAAGTCAGAATCCCTCCCAG 20336577 >seq3613 Length=1552649 Score = 73.4 bits (80), Expect = 6e-11 Identities = 86/114 (75%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| ||||||||||| | || ||| | ||||| | || | || |||| || || | Sbjct 236953 GTAGGAGAGGAACCGTAGG-TTAAGAC-ATTTGGTGTATGTGTTTGGCTGAGGAGCCAAT 237010 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | || |||||||||||| |||||||| ||||| ||||||| |||||||||| Sbjct 237011 GGCGTAGAGCTACCATCTGTGGGATTATGACTGAATGCCTCTAGGTCAGAATCC 237064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819109267712